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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0176600.1

GGACTCACTATGCATCACTCTTTCATAGGATCTTCAAGCAATTGAATGTGTATAAGGAAGCTAAGACTGCTAGTGGTTCCGAGATGAAGGAACACTTCACAAAGATGCAGCTAGCCACATTGGCATCCCACATGCCAACGACAGCCGGCCTGCAAATCTACAAAGCCCAACAAGTTGGGCCATACAATGGGTCTTTCTCCTCTACAAAACCCAACAGCATGCCAAAATAGGAATAAGTCCACTTCGAATCACTTTACAAGCAACTGCATCTGCAGCATCTCAGATAGGAGTAGGCTGCATCACTAGCCCAAAAGCTTGATCCACAGGAAGGGCACCCCTTCTTGCTGTTTCTGAATGACTTCTTGTCTCATTGTAGAGATCCACCATGCTGTTTGCCTGCTGCAACTCCTGTGCAAGGTGTATACCACTAAATGCAAACCATCTTCAACCTGTTTCACTATGACACCTTCCATAAAGATCTTCTTTTCGTCGGAGCGCGGGGGAGGCACGGACCGATTGGTGGCTGCCACCGCAGCCGGCGAGGCGGCGCCGGTGCAACAGAGCTGGAGCGCTGCCGCTCCGGGTCAGGATCATCAGTGCCCTCCATGATACGAACCCTAACCACCCCTCCCAATGCGCCCAAACCACCGTACCAATCCCTCCTCCGGCGAGGCGAAGGGGAAAGGCACCAACCCCCAGCCTAATCCCCGGATTGCGATTTGAGGTAGCAAGC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.987025
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0176600.1 2 26566021 C T
Osa02LNT0176600.1 2 26566119 G A
Osa02LNT0176600.1 2 26566140 A G
Osa02LNT0176600.1 2 26566230 A G
Osa02LNT0176600.1 2 26566348 G A
Osa02LNT0176600.1 2 26571027 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0176600.1 osa-miR5794 Cleavage 5.0 20.71 1 21
Osa02LNT0176600.1 osa-miR444a-3p.1 Cleavage 4.5 17.565 1 21
Osa02LNT0176600.1 osa-miR1428a-5p Translation 4.5 24.007 1 21
Osa02LNT0176600.1 osa-miR444d.1 Cleavage 4.5 17.565 1 21
Osa02LNT0176600.1 osa-miR1851 Cleavage 5.0 21.571 1 21
Osa02LNT0176600.1 osa-miR2868 Cleavage 4.0 16.303 1 20
Osa02LNT0176600.1 osa-miR5499 Translation 4.0 15.728 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0176600.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0176600.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0176600.1 2 yld2.1 Morphological trait Seed RM262 RM263
Osa02LNT0176600.1 2 qSS-2 Physiological trait Sterility RM301 RM263
Osa02LNT0176600.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0176600.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0176600.1 2 Hbd2 Physiological trait Lethality nan nan
Osa02LNT0176600.1 2 qCSH2 Resistance or Tolerance Cold tolerance RM262 RM263
Osa02LNT0176600.1 2 T2-2tiller Morphological trait Culm/leaf C424 C747
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus