\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0177300.1

ACCTCAGTCAACAGAATGCTAAGATCTACTACGATTCATCCTCCATTCCTCGCACAATTGAATAGTACATACATTGGCACATTGCCGGTCAGAAAGACTGAATGCGAACACCACATTCTATAAATCGTCCTACCACAATTGAATGATACATTACCACTTTACCAGTCAGAAGACAGGGTGAACACCACATTTTAATTTTCAGCTTGACCCGCCCGAAACACTTCTTTTGTCCGCCCGTAGTAAACCACCTCACCCCCAGGCCACACAAGAAAATTCCAGCCGATAGGAGATCCACCTGTCACACAAGACCCTTGCGCAATCTCACTTCTTGGTGTTTCCCCCATCTTCTCTGTCTGAGGAGCGTGATTGTTTTCTGCAGATGGAGGTGGTTCCACTGGCCCATCCTTCACAACTCCAGCTAAAGGCTTCTCTGGTGGCTTAGCAGGTTCAAAAGTGGCACCGAGGTCATGCCTCATTTTCTTGGCTAGCTCCATGACTACCTTGATCTCTTTCAGAATCTCGCGAGCAGCATCACTGTTTCGGAAATCAGTAGCTTCGTAAACCTGCACGAAACGAACACGGAGGTCGGCGACGGTGGCCCGGATCTTGTAGTAGGCGGAGTTATGGAACCCCGCCTCCTCCACCTTACGCTTCTTCGGCGGCGGCGGTGCGGGTGCCGGCACATCGAGCGGAGGAGCAGTAGGAGAGACCTTCTGCTCGGCAACGACCGTGGCCGTGACCACGGGCTCCGGTGGTGGAGTTGGCCCAGGTGGAGGCGGCGGGGCGGCGGTGACATCAGCGGCTGTGGTCAGCTCCGCCATCTGAGTTTGCCAGGTAGAGAAATGGTTTTGACTCGGGGTTAGATCAACCAGAGTGTGCCTTCCCGGCTAATTTACTACTACCTCCGTCCCAAAATAAACTTTATAAAAATATTGAATTCACATTGTCTCTAACATTCTATTGTTATTAGATTGTACTTGGCATATATTATTTTGTTTTTTATTCTAAACTATAGTTTATTTGAATTTATTAATTACCTAATTTAAATATCTATACTGTTAGTCTAAATTATTTTTGAAATTAAAATATTATAGATATATCGCAATGTTTTAGAAACGGGAAGACAAAGTACGTTCGATGGTTTCAATTTATAACCTGATAAAGAATGTTAAATTAGATTAATGCCAAGTGGCACAATATGTTTTTTAGAAAATTTATAACCTAATAAAGAAAAAAATGTTAAATTAGGCTGCGTTTAGTTCCATCCAAAGTTTGGATTTTAGTTGAAATTAGAGATGATGTGACTGAAAAGTTGTGTGTGTATGACATGTTGATGTGATGGAATTTTGCAAACTTTGGATTCAAAGTTTGGATCTAAACACACCCTTAGATTAATGCCAAGTGTCACAGTATGTCCTTTAGAAAATTTTATGGAATGAAAACTTCTTATAAGAATATATACCTTAATAAAAAGATTTTTTGAGTGACTATGAGTAGTTTGTGGTATAGATTCTTCTTAAGAAATTTATGTGAGTTAGGATGAGTACAAATTATGTGAGCTTACATTTTCCGTTCTAATGCAACTATTCTAAGGGTGTTTGGATGAGATTCAGTAACCAAATTACATCTGCTAAAAACAAAAATCAAAATTAACAAGTTGAAAGTAGGTGGAACTGGGCAGAGGCAGATCTAACCCTGTTTCGGTTGAGGGGTCGGTTTTCGGTTGAACCCCCAAACTTTTTTGAGGGATAACGCAGAATACCTGATGAGGTGTGGATAGGGAGGGAGGGATGGTCACCGGCGATAGACGATGCGGTGGAAGCAGGAGGACGCCGGGCGCCACCTCTGCTCGCAGGATGGGGATCGGCGCAAGCGGCGGGCGAGGAGACGAAATTCGAGGCCGAGGCCGGATGGGATGGATTAGGATGCTCACCGGTGAGCGAATGCGAGGAGACGGGAGTCGGGGGGCGGCGGGCAAGGAGACGGGGCGGATTGGGGAGGCGGAGGTCGTGCAGCGCTCT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.177183
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0177300.1 2 26983404 A G
Osa02LNT0177300.1 2 26984519 T G
Osa02LNT0177300.1 2 26985309 A G
Osa02LNT0177300.1 2 26985325 A G
Osa02LNT0177300.1 2 26985376 A G
Osa02LNT0177300.1 2 26985951 A G
Osa02LNT0177300.1 2 26983696 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0177300.1 osa-miR5831 Cleavage 5.0 11.203 1 24
Osa02LNT0177300.1 osa-miR2873c Translation 4.0 9.375 1 21
Osa02LNT0177300.1 osa-miR6248 Cleavage 3.5 9.796 1 21
Osa02LNT0177300.1 osa-miR1436 Cleavage 5.0 9.843 1 21
Osa02LNT0177300.1 osa-miR1439 Cleavage 3.5 10.594 1 21
Osa02LNT0177300.1 osa-miR1850.2 Cleavage 4.5 12.99 1 21
Osa02LNT0177300.1 osa-miR1862e Cleavage 5.0 13.333 1 24
Osa02LNT0177300.1 osa-miR2118f Translation 4.0 19.583 1 22
Osa02LNT0177300.1 osa-miR2118f Translation 5.0 20.277 1 22
Osa02LNT0177300.1 osa-miR2118g Translation 3.5 19.583 1 22
Osa02LNT0177300.1 osa-miR2118i Translation 4.0 19.583 1 22
Osa02LNT0177300.1 osa-miR2118j Translation 4.0 19.583 1 22
Osa02LNT0177300.1 osa-miR2118j Translation 5.0 20.277 1 22
Osa02LNT0177300.1 osa-miR2118l Translation 3.5 19.583 1 22
Osa02LNT0177300.1 osa-miR2118m Translation 4.0 19.583 1 22
Osa02LNT0177300.1 osa-miR2118m Translation 5.0 20.277 1 22
Osa02LNT0177300.1 osa-miR812o-3p Translation 5.0 11.373 1 24
Osa02LNT0177300.1 osa-miR5080 Cleavage 4.0 13.62 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0177300.1 2 oa2.1 Resistance or Tolerance Drought tolerance RM263 R3393
Osa02LNT0177300.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0177300.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0177300.1 2 nan Physiological trait Germination/dormancy RM263 RM221
Osa02LNT0177300.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0177300.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0177300.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0177300.1 2 Hbd2 Physiological trait Lethality nan nan
Osa02LNT0177300.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0177300.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0177300.1 2 qSDW2 Resistance or Tolerance Cold tolerance RM263 RM6
Osa02LNT0177300.1 2 T2-2tiller Morphological trait Culm/leaf C424 C747
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus