\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0180500.1

ACACAATCCATATTTATTCCACGTATGAAACCCAAGCCACTGAAGTGTGAGGGCGTTGATGATACAACGACAAGTTTATTTTACGGGGGTTTACAAGACAGAACTTAGTTGCTCTTTTGTTTTTATTCACTGAAAATACTTACAAAGTGAAAGTTCGTCGGCAAAATAAAAGAGCATCACTGTTCACTCAAGGCAAGCCATGAAAAAAAGACTCACGCATGACATCAGGAAATGAACTCACAATTCAGAAAACCTATAACAAACAACAAACTTGTACAGTTTCGTGAGCGACAGTCTTTGCACTTCGAGAAGATCAAGGACCGATGCAGATGGCTTTTAAATATGCTACCGAGTGCACCAGTAATCTCTACGTCGCGCCTCAAGTTGCCAAAACTATTATCACAATTAGCAAGACAACCCCGAAGATCACCAGAAGAATGCAGAGCAGTGATGAATTCGATTTCTGAGTCTTGGACGCTTTCGCGAGTTCTGTCTTTGCCTCTTTGGTTGCTGCTGCAGAATTCTCAATGTTTGTATCGATTTCCTCGATTGTAACTCCTTGAATATGCACAAGTGTAGCAAGATCCTTAAATGCTTCATGTACTTCACCAATCTGTTGTTGAATATCTTGAATAGCTTGCTCCCTTTCCTCAATGATAGCTTCATTGAAAACAATTTCATTATCCAATTGCAGCACCTCTTGCCTCTTTGATTCTGCGAGTAGCGCATGCTGTTCAGGAATTTTACCAGAATCCCTGGCTTCTATACCACCTGTAGTATAGTTTGGCTGAGATGTCTGGGGAACAACTGGCTTATATGCCATCTCCCTTTGAATCGCAAGATTTTGAAGTTTTCCATACTCCTCCATCGTCGTGGCAAAATCCTTGGCAAGCTTCATGTCAGCAACCCTCTTGTCTGCACTAGTATCGGCGTTCTTGTCTGCCTCAGCAGCTCTCCTGAGCTTCTCCTTCGCATCCTTTGCCAATTGAAGAATGTTATGACTAGTCTTCTGCCTGTGGAGAAATCAACCAATCAGAACACCAGAGTGATGGTAAACGACATGCCTCGAGGGCATGAGCTACCAACCATCACAATTTCGATCAATTAACTTGAGCTGAGCCAAAAAAATAATAATAATCGCGAGCATCTAGCATTCTAGGACATGAAACGTGTAGAGGCAAACAACAATTAAAGGAGTGAGGAGTGGGGGGGAGCGAGGAGAGACAGCTGGTCACGAAGGGCGGGGGTGTCCTTGGGCGTCCCGAGCGAGTTGAGGAGGCGGCGGTAGGAGGCCACGGCGGTGGTGATCTGGAAGACGAGCGCGCGCGTGGCGTCGGGGCCCCGCGCCCTCCTGGGCGCCCGCACCGCGCCGGCCTCCAGATCCGCGAAGCTCATCGCTGATCCCCCCCGGCCTTTCTCCTCGCGCGCGCGCGCGCGTCCGATCCCCCTCGCCTCGTTACGCCGCCGAGGTGCCCCGCGGCTGCGCAGGGTACGGCGCCGGGTAGCGAAGGTGGTGGTGGTCCTGGTGGAGGCGGCAGAGCGGAGAATACACTAGGGTAGAGTCGCCATCGCCACCGGCCACGCACAGTTGCAGGCAAGAGTTCTTTATTGTTCCAT

Coding Potentia
Explanation CPC Score
noncoding -1.18444
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0180500.1 2 28969515 C T
Osa02LNT0180500.1 2 28968607 C T
Osa02LNT0180500.1 2 28969596 C T
Osa02LNT0180500.1 2 28969687 T C
Osa02LNT0180500.1 2 28969764 T C
Osa02LNT0180500.1 2 28970889 A G
Osa02LNT0180500.1 2 28971305 C T
Osa02LNT0180500.1 2 28971710 A G
Osa02LNT0180500.1 2 28970588 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0180500.1 osa-miR7695-3p Cleavage 5.0 13.552 1 21
Osa02LNT0180500.1 osa-miR817 Cleavage 5.0 13.957 1 21
Osa02LNT0180500.1 osa-miR1866-5p Cleavage 4.5 18.215 1 24
Osa02LNT0180500.1 osa-miR2118a Translation 4.0 12.744 1 22
Osa02LNT0180500.1 osa-miR5494 Cleavage 4.0 16.02 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0180500.1 2 nan Physiological trait Eating quality RG139 RZ58
Osa02LNT0180500.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0180500.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0180500.1 2 qPH-2 Morphological trait Dwarf RG324 RG83
Osa02LNT0180500.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0180500.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0180500.1 2 qGY-2b Resistance or Tolerance Drought tolerance RM526 RM525
Osa02LNT0180500.1 2 qTGW-2a Resistance or Tolerance Drought tolerance RM526 RM525
Osa02LNT0180500.1 2 qSB-2 Resistance or Tolerance Sheath blight resistance G45 RZ273
Osa02LNT0180500.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0180500.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0180500.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0180500.1 2 nan Physiological trait Eating quality nan nan
Osa02LNT0180500.1 2 qSDW2 Resistance or Tolerance Cold tolerance RM263 RM6
Osa02LNT0180500.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0180500.1 2 oa2.1 Resistance or Tolerance Drought tolerance RM263 R3393
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus