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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0184000.1

GATCATGAAATGCGCTCGATTCCCATTTGTAGGAGAGCATCAAGTACAGAGTTTTTCTGGCTTTTTTTTTCTCTTTTTTTCTGGAGCAACATTGTTCTGATTCCAGGTGCAAATGTATCAAGAAAGAAAAAACGAGCAACCTCACAACAAGGCCCCATCAAAGCCTGAAAATTTACACGGATTCATCAGGGCCAGAGTTTCCCGAGCAGCCCTGTCATCCTGAGGTGTCAAACTCAACTTCACAGTGTGCAAACGCGCCAACCTTTGCAAAGCTAATCAAGGCCGGGTGAAACACCGAAAAATACAGATTCACCGCTCGACGATTAACCATCGTATGATCGTGTTCTATGCTTGACGCCATTGGCAGGGCATCAGCTCCCCGTCGTTTCGTCGATGCTGTGCAGCGAAGGCCGCCATTGCCGGTGCCGCGCGCTGGAGCTCCGGTTGCTGTCCTGACGCGCCAACTGATCAAGACTCGCATCCAACGCCGCCTCGTCGTCGAAGTTGTCGCTGTCGTTGTCGTTCTCCTCCGCGGCCTCATCCACCTCCGCCGCCGCCGAAGCGGCGGCGCGTGCCTTGCTCTGCAGCTTCTGCCTCGACTCCTCCAGCTGCTGCTGCGCCTTCCTCACCTTCTCCTCCTTCCTCGCCTGCACCGCCTTGGTCACCTCGTGGGTGGTGATGAGGCGGTAGGCGTGGCCGAGGAGGAGGGTCTCCTTGGGCTTGAGGAGCTTGACGCGGGTGAGGCGCACGGTGCGGCGCGCGCCGCCGTCGCCGTCCTGGCGCTCCTCGGCGACGCGGAGCGTGACGAGCGCGATGTAGTGCCCCGGGTTGGCGCGCATCACCTCCGCGGCGCTGGTCGACCAGCACAGCCGCTCCACGCGCCCGCCCGGGTGCTGGATCACCACCGCCGCCGCCTCCGCCGCCTGGCAATTCCCCATCCTCTCCCCCCCGCAACGCTCGATCACACACGGTTAGCTAGCCGAGCCCCCACCGCTATACGGGAACGGGAGGGAGGCGCGCGCGAGGTGGACACGGCACAGTGAGCAGCGCTGCAGCAGCAACT

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.501836
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0184000.1 2 31039517 A G
Osa02LNT0184000.1 2 31039660 G A
Osa02LNT0184000.1 2 31039670 A G
Osa02LNT0184000.1 2 31040093 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa02LNT0184000.1 osa-miR5821 Cleavage 4.5 22.819 1 21
Osa02LNT0184000.1 osa-miR530-5p Cleavage 4.5 18.529 1 20
Osa02LNT0184000.1 osa-miR3979-3p Cleavage 4.0 18.844 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0184000.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0184000.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0184000.1 2 qGRH-2 Resistance or Tolerance Insect resistance C621 C601
Osa02LNT0184000.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0184000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0184000.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0184000.1 2 qCHR-2 Others Others RM263 RG520
Osa02LNT0184000.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0184000.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0184000.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus