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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa02LNT0184300.1

ATGGCTACACCCTACAAGTACAGTTTGGCCGCGGCGGCGGCGGCGGTGGCCATCACCGGCGACTCGATCGTCTCTGCGGCGTGCTCAACTCGATTCCTCTCCCCACGCGTCTTGTTCACCCAGCCTGAGGCTCCCGGCGGCCCTCGTGTTGCAATCCGCAACCCACAAGAGCACTGCAGTGTTCCCGGAAATGGCAGAGTTCAGAACTGATTGAAAGCCATGTTACCTCCTTCTCGTTGTACATGGGGATCTGGACAAGAACCATGGGGAAGGACGCCCGGCCAGCCTCATCGTCGTCCTCCACGACGACGGGATCGCACCTGTACAGCCTCGCCGGCCGCCGGCGGAGCAACTTCACCACCGCGCTGACCACCCCGAGGAACACCTTCTCCGCGAGCACGATCACCGACATGACCATGCACGCCACCACCGCGCCTCTAAGCAGCGGCACCAGCAGCTCCATCCTCACCTGCCGCCATGCCTGCACCAAGCTCTCCACCACGGCGGCCACCGTGTCGGCGACCAAGAGCCTATCACCGCCGGCGCGCAACGCAAGATCACCTGCATGCAATCGGCGATCGTGCACGGGTGAGGTGCCTCTTGGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.934546
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa02LNT0184300.1 2 31230724 T C
Osa02LNT0184300.1 2 31227870 A C
Osa02LNT0184300.1 2 31227880 T G
Osa02LNT0184300.1 2 31228698 T G
Osa02LNT0184300.1 2 31230031 G A
Osa02LNT0184300.1 2 31230666 T C
Osa02LNT0184300.1 2 31230671 A G
Osa02LNT0184300.1 2 31231350 T C
Osa02LNT0184300.1 2 31229532 C T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa02LNT0184300.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0184300.1 2 qDLR2-1 Resistance or Tolerance Other soil stress tolerance RM525 RM406
Osa02LNT0184300.1 2 qEL-2 Physiological trait Eating quality C370 C601
Osa02LNT0184300.1 2 qER-2 Physiological trait Eating quality C370 C601
Osa02LNT0184300.1 2 qWA-2 Physiological trait Eating quality C370 C601
Osa02LNT0184300.1 2 nan Morphological trait Panicle/flower RG139 CDO686
Osa02LNT0184300.1 2 Hd7 Physiological trait Flowering R3393 R2511
Osa02LNT0184300.1 2 nan Morphological trait Seed C747 C1445
Osa02LNT0184300.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0184300.1 2 nan Physiological trait Eating quality C621 C370
Osa02LNT0184300.1 2 qLTSPS2 Physiological trait Sterility RM1385 RM240
Osa02LNT0184300.1 2 qCHR-2 Others Others RM263 RG520
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus