>Osa02LNT0184500.2

AAGAAAATTTACTTAAAAGTGTTGTCTGATTTTCTCCATTCTTCATTCTCTAACCGACTTTACATGATGCACGAACAAAATTAATTTTAGTGCAAAGTTATGGACTCAAAACCCTCAGAATCGCTCCTATTAAAGGGATAAAGAAGCAGAAATATCACCGGCATGTTGCCTCAATGGACTTGATATTAGTGCAGCTTGATCCAATCCCCCCCCCTTTTTTTTTAGAACACAATCCCCCTAGTATATGCTATTCCGGCAAACCTTCAGCGAGATGCTACTTACTCACATGAGATTGGGCATCTGCTAAGTTGCACACTTGCATTCTAGCTCTATCCATGCTGATACTTGCAGCTACCAAAGTTTGCATTGCAAAGCACTTCAATAAGTAGGTGTGATGAAGTTTATCGTATTTTCCATTGTGAAGTTACTTCCATACTATATCGCCCAAAAACTTCAGAGCAGGAACGCCTCTTATTTCCATGTCGACAAGAGGTGCTTGGATTAAGTTCAGCCCCATTAGCTCTGGATCATTCCTTATCATATCCAAAGCACGTGTTTGATCCTTTCTTTTTATAGCACAGAATTTACAGTCTGATGACGAAGGTGGTAGAATTTGGTTAACAATGAGTCTCTTAACGGGAACACTTTCATTTCTTAGGGAAGAATGTAGTCTTGCTGATTCACTTATTGCCATCACAATTATAAATTCAGTTGATTCTGTGTCACGAAAAAGTTCTCGCACTTGGACCATCCTTTCTCTCAGCTGCTCCAATTTGTTTGCTGCATCCTGCTGTTGAACTTCTTGTCCAAAAACTGATTTAATAGCTGATGTTGCAGAAGCGATCTTGCTCCTAAGCTTCAAGATCTTCCCAATAGATGCATCCAGGAAATCTGGCAAGGATAATAAACGGAGTGTATGGCCCGTTGGAGCAGTGTCAAAAACAATGCGTCTAAACATGCTATACTCTTGTGCTTCAAGGAATTGCATAACCTTTGAAATCGCTATTGCTTCATCCAATCCTGGTGGTGGTGTGTCCAATAACTCCCCCAGTTTTAACTCCCCCAGCTGCTCAGCAAGCACTCCCAGTCCCATGCCATCCATGAAGTCCTTTACCCCAGTCCCTCCATTCTTCTGACTTGCTGCACGAAACTCTTCTCGGGCTTTCTCAGGATTTATCTCAAGCGCAAACAATGGCGCCTCAGGCCCCTCGACCGGCACGAGCGCCCCGCCGCTCAAATCCTGCGCGAAGGAGTCGCTGAGGGAGTGCGCGGGGTCGGTGGAGACGACGAGGGTGGGGTGCCCGTTGTTGGCGAAGCGCACGGCCAGCGACGCCGCGCAGCTCGTCTTCCCGACCCCGCCCTTCCCGCCGAGCATGTAGTAGCGCCTCCGCGTCCCGGCCGCCATCTCCTCGAACCCCATCTCCTCCGCCCCTTCCTTCGCCGCCGCCGCCGCCGAGGCGCGCAGGCGCAGCGAGGCGTAGCGGCCGGGGAGACTGAGCGGGAGACTCACGAACTGCGCCCGCACTGGCGCCGGCGGCGAGAGGCTGCCCCACGCGGCGGCGCGGAGGCGCGGGGCGGCGGTCGCGAGCATCGTGGCGGAGCGGTGGATGAGGCGGAGACGGGTCGGTTTC

Explanation	CPC Score
noncoding	-1.12419

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0184500.2	2	31252863	C	T
Osa02LNT0184500.2	2	31252864	C	T
Osa02LNT0184500.2	2	31253059	A	T
Osa02LNT0184500.2	2	31253390	C	T
Osa02LNT0184500.2	2	31254942	A	G
Osa02LNT0184500.2	2	31254980	C	G
Osa02LNT0184500.2	2	31255997	C	T

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0184500.2	osa-miR171a	Translation	4.5	14.475	1	21
Osa02LNT0184500.2	osa-miR171b	Translation	5.0	14.475	1	21
Osa02LNT0184500.2	osa-miR171c-3p	Translation	5.0	14.475	1	21
Osa02LNT0184500.2	osa-miR171d-3p	Translation	5.0	14.475	1	21
Osa02LNT0184500.2	osa-miR171e-3p	Translation	5.0	14.475	1	21
Osa02LNT0184500.2	osa-miR171f-3p	Translation	5.0	14.475	1	21
Osa02LNT0184500.2	osa-miR171i-3p	Translation	4.0	14.475	1	21
Osa02LNT0184500.2	osa-miR1850.1	Cleavage	5.0	8.534	1	21
Osa02LNT0184500.2	osa-miR2106	Cleavage	4.5	11.839	1	21
Osa02LNT0184500.2	osa-miR5508	Cleavage	4.5	22.982	1	21
Osa02LNT0184500.2	osa-miR5821	Cleavage	5.0	16.373	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0184500.2	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0184500.2	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0184500.2	2	qER-2	Physiological trait	Eating quality	C370	C601
Osa02LNT0184500.2	2	qEL-2	Physiological trait	Eating quality	C370	C601
Osa02LNT0184500.2	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0184500.2	2	qWA-2	Physiological trait	Eating quality	C370	C601
Osa02LNT0184500.2	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0184500.2	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0184500.2	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0184500.2	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0184500.2	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0184500.2	2	nan	Physiological trait	Eating quality	C621	C370

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus