>Osa02LNT0184600.1

CCCTTAATTTTGAATGAATTTCAACAGATTTCAAACAAAACCGTTTGAGAATCACATTTTGAGCCAGCTCAGGATGTTCGAAATTCATCGAGAATGTGAACTCTGAACAGAAGAATCCCCACAAACGTGCAGTCATTTTCAATGACAACGGGGAACATACAATCTGGAATGATAGGTTATATTGAGCAGAACATAAATATTGAGTTGCTCAGGTGTTGTACAGATCTACCCTACTCAACCTATAATACATGCTCAAAATCTTTCTTGCTGAGACGAATTTGCTAGTCAATCGAAAATTGAGCTGTAATTTGTAGATTATAACGCAGAGATATTAACAAGCTGCAACCAGTTGTATCTGTATGTACCACTAAGCTCCAAATATGACTGAAACAACCCTAATATGCGATGCGGCTCCACCAAGTCAAGTTTTCATTCTGGCTTAGACGCAAGCAGCTTCAAGCCTGCCCCTTCTATACAGTGCATACCCTTCTCCATGTAGTTGCTTCGATCAAAGTTGGTCACCGCATTTTTGCCACGGATCTCAATAGCAGCAATGTCGTAAGCCTCCGCTGCTTCTTCCTCAGTTTTGAAAGTTCCCAGGTAAATGTCTCTTGTTCCAGCAACCAGTCCTATGCGTGCCTGCCACCTCCCATCTTTCTGCCTTCTAGTAACTCCTCTATAAATAGAAGCCCCTCTTGAGAAGCAGCTACTTCTTCTTCTTAGGTATGTTACGCATTCCTCTCGAGACATGTCCCTTATGTCCTCCAGTTCCCTTTCGTATTCTGAAACCGAGAAATTCAGCTTTGTATTTTGGCCCCAGTATTTAAGAGCTGCAACATCATATGACCTGGCAGCTTTTTCCTCGGTATCATAACTTCCTAAATAAACTTGCCTTCCCTTTCTTCTCCGCCCTTCCATTCTGCACGAACTGTCCCACAGATGAGCTTCATATTTTCCACTCCATCTATGCCTGGTCACACCATGGAAACTAGATGACCGGGTGCCTGCAGGTCGCACAGCCGTAGTTCCAGCAGTACCACTAGTTCCACCCTTCTCATCTCTATAACCTACGACTGTTACAGGATTAACTGAATCTCTAACATCATCAGCAGGCTCATCCTTCTTGACAACACTAAGAATAGTAACTCTCTGATCCTCAGGGATACCATCAGCAGACTGTCCATTCTCTGCCACATTTGCCTTTGCATTCTTATCATTGATAGGGTTCTTGCTGCTTGAAGGGACCACTGAATCGTTCTTTCCTTCGGCACAGGTCTGAACATCAACTTCATCAACTACCTCACGTTTCGGGATCTTCTTGTGACCAGTACCAAGAGACTCAACTCCCTTCGTGGTGTTCGAATCCTTAGCTCCTGACTCCACTGCAGAGTGCAAGCCATCCTCATCCGGGGCGGTCGCCGCACACGCCGCAGTTGCTGGCAACGAATTCAGATTGATAGGGGAGCTCCTCTCCGCCTTCTCATCATCCCCTGATTCGCCCGCAGCCTTCTCCTCTTTCAAAGAGCTCTCCATTTCCTGCCCAATATTAACCCTAAGCCACCAATCAATCGCTCTACCCACGAAATGTCCGTGGCCGGAAGGGATCGATGGGGACGAAAGATCCGGACGCCTCCTCCGAAGACCCAAAAGAAGAAGAAGAAAAAAATCCTACAGCGTCGATTACCACAACCGCGAGAGGCAACAGAAATGGGGAGGAATCAACTACCGAGGCAGGACATAAATAGGGGCGACGTCAAATTGATTGTGGAAACGACGAGACGACGACGAACGCGAGCGGCGAGCAAGGAGGCGGCTCAGTGGGGAGTGATGCGGGAAACAACAAGAAATTTCTCGGGGAAACCGAGAGAGGAAAGTTGGGGAGAAAAATACCCAGATTATACAATCTGTTCTT

Explanation	CPC Score
noncoding	-1.03696

Transcript ID	Chromosome	Locus	Ref	Alt
Osa02LNT0184600.1	2	31410966	A	G
Osa02LNT0184600.1	2	31412274	T	C
Osa02LNT0184600.1	2	31412994	T	C
Osa02LNT0184600.1	2	31411196	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa02LNT0184600.1	osa-miR6252	Translation	4.0	13.468	1	23
Osa02LNT0184600.1	osa-miR530-3p	Cleavage	5.0	13.639	1	21
Osa02LNT0184600.1	osa-miR1866-3p	Translation	3.5	18.027	1	22
Osa02LNT0184600.1	osa-miR2096-3p	Translation	4.5	16.273	1	21
Osa02LNT0184600.1	osa-miR2871a-3p	Translation	4.5	23.077	1	21
Osa02LNT0184600.1	osa-miR2871b	Translation	4.5	23.077	1	21
Osa02LNT0184600.1	osa-miR5337a	Cleavage	5.0	22.833	1	21
Osa02LNT0184600.1	osa-miR5491	Translation	5.0	12.424	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa02LNT0184600.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0184600.1	2	qDLR2-1	Resistance or Tolerance	Other soil stress tolerance	RM525	RM406
Osa02LNT0184600.1	2	Hd7	Physiological trait	Flowering	R3393	R2511
Osa02LNT0184600.1	2	qER-2	Physiological trait	Eating quality	C370	C601
Osa02LNT0184600.1	2	qEL-2	Physiological trait	Eating quality	C370	C601
Osa02LNT0184600.1	2	qWA-2	Physiological trait	Eating quality	C370	C601
Osa02LNT0184600.1	2	nan	Morphological trait	Panicle/flower	RG139	CDO686
Osa02LNT0184600.1	2	nan	Morphological trait	Seed	C747	C1445
Osa02LNT0184600.1	2	qCHR-2	Others	Others	RM263	RG520
Osa02LNT0184600.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0184600.1	2	qLTSPS2	Physiological trait	Sterility	RM1385	RM240
Osa02LNT0184600.1	2	nan	Physiological trait	Eating quality	C621	C370

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus