© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa01LNT0016700.1
GGCCAGATTCAAGATATGGTTGTTGATTTGAGTTGAAAAACATATGAACATCCAAGACAAAGTATACCCTGCAAAACTATGAATAAACGAATTACAATTGTGTATGATACCGATACGAGGGCACAAACTGCTGCAAAATGGTGCTCAATTAAAAAAGAAAAACTATTCCTTCCTATTTGTTTTACAACAGTCACATCTCAGCCAATGACACTAGAAAGAAATAATGGAGAAGAGCACATATTCACTGCTTCTCCAGAAGCTCATATTTATAGAAATAATTATGCATCATCAGGAGCGTGGCTCGTGTCAATGCTGAACCGAAGGGCATGCCAACTCTCAGTTGTTCAGATCTAATCCTTGCGGACAGTTAACTTTACAGGCTCACAAATGGTTGCTGCAATTTCACGCAACATATACAGGTAAGAGCGATCTACATCACCTTGAACCATTTGCATCAGGTTTGAGATTACTCTATTTGGCCTTCTCTGGAGCAATGTTTTTGGCCTTCTCTGAAGCGGAACACATCGTGGTTCCTTCTTGTTGGCAAGCATTGATGGTTTGGGTTAGGGATAAACCGTTTCTTGATATCACTTTGTCATCTCACTGAATAAGGCTCTGAATCATTCGTATTTGTGGTATTTACTGACTTCTCAGTAGACAAATTGCCCATGGCATTGACACAATCACCACCAGCTTGCCGTGATGCTTCTGTGTTGTCTGCAGAACGTTGATGCTCCTCAGAATGAACACTATGCTCCCCAAAAACGCCATTGGCTTCAGAGCCTGACGAACTTGAGGCAGGTGAACGGGGTTCCTGCTTCTCTAAATCATCCATGCGTTTACTAACCAGGTTAGTCGAAGCTCCAATCTTAACACTAGTAATTCTCGTTTCTATCTTTTGTCTCTTGTGGAACTCCCCATCAGACTGTTTGCCATCCACTTTACTATTCATTAACTTTCGCTTCAATTTGGCTATAGTTAGGGGTTCATCATCCTCTTCAGGCCTGTCAGGCTCCTTAGGTGGAGGATTGAAGTCCTCATCATCATCATCAGCATAATCCACTAGTCCACCAGATTTAGGCCTTGAGGAAACATCATCAGCTTCACTGCCATTAGTTAACTTAGCCCCACCATCTTGTTTCTGAGCATGTTTCGTCCGCCGGACTGAATCTTCTTCGTCGCTGTCCTCATTGAAATAGTCTTCCTCTTCCTTCTCAAGGCCTCTTTCTTCCGCTTTCTTTCTAATATCAGGTACATTGGCACTTAACTTCGTTTCAGCACTCTCCAAGTACTGTTGATACTTAAGTCTAAAGGCCTGAATACTCCCAAAGTGTTCAAACTTCATAAGTTGATCCCAAAAGGACTCATTGGCATATATAATAAGTTGTTTTAGACCTTCCTTCCGTATGTATTCCAAAAGTTCGAGTACTCCTGACTGTAGCATGTTATATCTATCCCCATTTTCAACAAAGGCGTCAATTATTGGTTTGAACAAATTCATCTTGACAACATGACGAATAAGAAAATCATCATTTCTCGATATAGTAGTTCGCATAAATCTAACTGCTGCAACAACCAAAAACTTCTCCCTCCGTCGAGTCAAGGCAAGGATTTTCTCTATTGCATTGTTGATTAGAAAGTGGCACTTAATTTTGTAGGGATGATGAACTATGCAAAAGCATAATAGTTCACAAACATTTAACAAAATTTCAGGCTTAGTGCGATTCACTTCAGTTTCGGTATTTCCAGCAGAGTTAGATGCTCTGGAAATGTTCCTCGGAGGACATGATGATGCTATTACATCAACCAAATAGTCAAGATGCTTTTCATAGAAAATTTCAATAACAGCATCTCTATGTGCTCCAGACATGGTAAAAGAATCCATCAAAATACGAAGAATTTCCAGAAATTGACAGTGCATTGCCTCACCGAAGTCAGTTACCATTCCTTTGACCAGAAGTCCAAGAAGAGAATTCCCTTCTTGTTGGACAATATATGACCTCAGTAGGTTGGGGTCCTGATTAAGAAAAAGTATGAGGACATCTGTCCCAGCTGAAACAATCTTTCTATCTTGACTCTGCAAGACATCCGAAATGATATCAAATACACCTTCACCTGAAAGATCCCGGAACAGTCGTAATTGTTGAACAAGCGGCAAACTCTTACTGAGAGTGCAAAATTCATGCAAGAACAGCACCAATTCTCTTTTTGATTCCATAGAAATATTTGATAATCTCATCCTAGCAAACAATTCTTGGATAAAGCAAGAATCATCCTTTAGTAAGGAAATAACAGCGGCATTGTTCGAATGTATCATCGTGTTAAGACTAGCTAGAGTGCCATCATCCAACACTCGAGGTAATATAACATCCTTTAGATAGCCTATTCTATATGTTTGATGTATCTTTGAAACCACAGAAACATTTTTAATAGGTATGGCCTCTTTGAAAACTACATGATCCTTTAGAAAAGCGCGATGCTTTTGTACTTTAGGAACATCTGGGTCATATTCAAGGGCACCTATGATGTCAAGAATAAACTCATCTGAGAAAATCTTGTCAAAGATTGATGAACTGTTCAGCAATATGATTCCCCTGACTAATTTGAAGATCATGTGAAGATCATCTAAGTTCTCTAAATCCTCGCATATTCGAAAAATGTCCAGTAACTTTGGGAAAAACTCGCGATCTTGTGTTATCAACTCTGCCACGCGCATCTGATCTGTAATGCCACCCTCCAATATAGTCTTTAAAATTAAAGGAAGATTGGATAACTCAACAGGTGGAAGCTCCCTCAGCTCACCATTAACGGAGCGGAAGGATTCATCATTTGAATGCAATACTCTAGAGGCTTCTAGAGAAACCGAAGTTGGACGAGGACCGACTTCAAGAGCACCAAGGTTATTAAACTGAATGTTTCTCTGAATGTCACATATGTTGTCCCATATGTATGAGCACCCAGCAGCTTCCTGAAAGCTCAACGCTAATTCTGTTGCTACTTCTGGATCCCTCCATGAGATGATTGTATCTTCTTGCTTTCTGTAGATATCTTCAGAAGTAATGTTGTGCATGAGCAATGTTTCATTGTCTTCTTCATCCAAAACAGTCAAACCAAGTTCTTTAGAATCCTCAAGGAAGTCAATATTTACATGCCCTGTGCCCCGATCATCCCATTTCCCTCCATCAGTCAAACGGTATACTTTCACACGCTGCATACCGCTGGTGTTCGCCGCCGCGGCCTCGCCGCCGCCGCCGCCGCCTTCTTCTTCCGGAGCCTCCAAAGCGAACGAGAGAGCCTCCCTCTGCCGCCGCCGGGGACGCTTCCTTCAGTCGCTGGACGTCGCGGGGCCGCGAAACCCTAGCTAGCCACCATGAACCGAGACTC
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa01LNT0016700.1 | 1 | 13247194 | A | G |
| Osa01LNT0016700.1 | 1 | 13249376 | C | T |
| Osa01LNT0016700.1 | 1 | 13246574 | T | C |
| Osa01LNT0016700.1 | 1 | 13246788 | G | T |
| Osa01LNT0016700.1 | 1 | 13246859 | C | T |
| Osa01LNT0016700.1 | 1 | 13248458 | A | T |
| Osa01LNT0016700.1 | 1 | 13249108 | G | A |
| Osa01LNT0016700.1 | 1 | 13249263 | A | G |
| Osa01LNT0016700.1 | 1 | 13249532 | A | G |
| Osa01LNT0016700.1 | 1 | 13249572 | T | G |
| Osa01LNT0016700.1 | 1 | 13249675 | T | A |
| Osa01LNT0016700.1 | 1 | 13249682 | A | G |
| Osa01LNT0016700.1 | 1 | 13249698 | C | A |
| Osa01LNT0016700.1 | 1 | 13252016 | G | A |
| Osa01LNT0016700.1 | 1 | 13252782 | T | C |
| Osa01LNT0016700.1 | 1 | 13252920 | G | T |
| Osa01LNT0016700.1 | 1 | 13249838 | A | G |
| Osa01LNT0016700.1 | 1 | 13250292 | T | C |
| Osa01LNT0016700.1 | 1 | 13253247 | C | T |
| Osa01LNT0016700.1 | 1 | 13253255 | T | G |
| Osa01LNT0016700.1 | 1 | 13253279 | G | A |
| Osa01LNT0016700.1 | 1 | 13253366 | C | G |
| Osa01LNT0016700.1 | 1 | 13253551 | C | T |
| Osa01LNT0016700.1 | 1 | 13253774 | A | G |
| Osa01LNT0016700.1 | 1 | 13253839 | A | G |
| Osa01LNT0016700.1 | 1 | 13253914 | G | T |
| Osa01LNT0016700.1 | 1 | 13254706 | C | T |
| Osa01LNT0016700.1 | 1 | 13256297 | G | A |
| Osa01LNT0016700.1 | 1 | 13256598 | C | T |
| Osa01LNT0016700.1 | 1 | 13256720 | C | T |
| Osa01LNT0016700.1 | 1 | 13256984 | C | T |
| Osa01LNT0016700.1 | 1 | 13257061 | T | C |
| Osa01LNT0016700.1 | 1 | 13257645 | C | T |
| Osa01LNT0016700.1 | 1 | 13258093 | T | C |
| Osa01LNT0016700.1 | 1 | 13258310 | C | T |
| Osa01LNT0016700.1 | 1 | 13258431 | A | G |
| Osa01LNT0016700.1 | 1 | 13259034 | G | A |
| Osa01LNT0016700.1 | 1 | 13259758 | T | G |
| Osa01LNT0016700.1 | 1 | 13259946 | A | T |
| Osa01LNT0016700.1 | 1 | 13260078 | T | C |
| Osa01LNT0016700.1 | 1 | 13260201 | T | G |
| Osa01LNT0016700.1 | 1 | 13260647 | T | G |
| Osa01LNT0016700.1 | 1 | 13260709 | A | G |
| Osa01LNT0016700.1 | 1 | 13251467 | T | C |
| Osa01LNT0016700.1 | 1 | 13253806 | A | G |
| Osa01LNT0016700.1 | 1 | 13249541 | T | C |
| Osa01LNT0016700.1 | 1 | 13254397 | A | G |
| Transcript ID | Transposon ID | Chromosome | Strand | Start | End | Counts |
|---|---|---|---|---|---|---|
| Osa01LNT0016700.1 | DTM_#DNAt_MULE_japo_Os0182 | Chr1 | - | 13253944 | 13254474 | 530 |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa01LNT0016700.1 | osa-miR5788 | Cleavage | 4.0 | 9.327 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR812s | Cleavage | 5.0 | 15.23 | 1 | 24 |
| Osa01LNT0016700.1 | osa-miR5837.2 | Cleavage | 4.0 | 16.016 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR6247 | Translation | 4.5 | 10.949 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR164c | Translation | 5.0 | 15.396 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR164e | Cleavage | 3.5 | 15.396 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR444a-5p | Cleavage | 4.5 | 15.539 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR1425-3p | Translation | 5.0 | 11.006 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR444b.1 | Cleavage | 5.0 | 17.943 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR444c.1 | Cleavage | 5.0 | 17.943 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR2101-3p | Cleavage | 4.5 | 12.125 | 1 | 22 |
| Osa01LNT0016700.1 | osa-miR2875 | Translation | 4.5 | 14.685 | 1 | 24 |
| Osa01LNT0016700.1 | osa-miR2931 | Cleavage | 4.0 | 15.696 | 1 | 20 |
| Osa01LNT0016700.1 | osa-miR2873b | Cleavage | 5.0 | 20.695 | 1 | 21 |
| Osa01LNT0016700.1 | osa-miR5813 | Cleavage | 4.5 | 17.821 | 1 | 22 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa01LNT0016700.1 | 1 | nan | Physiological trait | Source activity | RG532 | RM472 |
| Osa01LNT0016700.1 | 1 | rfw1b | Resistance or Tolerance | Drought tolerance | C813 | C955 |
| Osa01LNT0016700.1 | 1 | nan | Morphological trait | Root | RM23 | RM306 |
| Osa01LNT0016700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0016700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | R886 |
| Osa01LNT0016700.1 | 1 | nan | Resistance or Tolerance | Salinity tolerance | RM1 | RM5 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)