>Osa03LNT0199000.1

AAGGGATTCACCGGTGAGAGCTGACTGATCAATCTTCAGAGGATCTCCCTCAAGTAGGCGCGCATCTGCAGGGACAATATCACCAAGCCTGATGCTGATAATATCCCCAGGTACCAATGTAGAAGCATCAAGCTCTTGCCATTGCTCATCTCTAAGAACCTTTGTTTTTAGCGCCAACCGGGCCATGAGTGCAGCAGCAGCATCGCCTGCATTGTTCTCCTCAATGAAGCTGATTGTTGAATTGATAATCAGGAGGCAGACAATTCCCAGGAAATCTTCCCAGTCAGTACCTTGGCTACCACCATTTGCTAGAACCAATGCCATCACTGCTGCTGCCTCCATCACCCAGGACAAAGGATTCCACATAAAGCTGAGGAACTTGATGATCTTGTTCTCACGCTTCTCCTCCAATCTGTTTGCACCAAACAACTTCAAGCGTTCTGCAGCATCTGCTGATGAGAGCCCACTCTGAGACGTATTCAGCTGCTCAAAAACGTCTTCCAGGGGCAGATTCTCCAAATCAACATCTTCGTCGAAGAAATTCTCTAGCCCAAGCAAAGGTTCACCTGGTTCATCCATGCCTTCAGCTAAAATCTGTCGCCCGGAACAGAATGTGAAATAATGAACACGGCTACAGCATCGTCATTTTCATTCCAAATGTTGCAGTGAAGATCTCACCACGCATTAGACAATCTGATGGACAAGATCACAGGAGATTTAAGTGGCGTTAGC

Explanation	CPC Score
noncoding (weak)	-0.394854

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0199000.1	3	4407972	T	A
Osa03LNT0199000.1	3	4408351	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0199000.1	osa-miR160f-3p	Translation	5.0	20.086	1	21
Osa03LNT0199000.1	osa-miR440	Cleavage	5.0	19.198	1	24
Osa03LNT0199000.1	osa-miR3981-3p	Cleavage	4.5	19.83	1	21
Osa03LNT0199000.1	osa-miR5507	Cleavage	4.0	14.355	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0199000.1	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0199000.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0199000.1	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0199000.1	3	qtl3.1	Resistance or Tolerance	Drought tolerance	RM7332	RM545
Osa03LNT0199000.1	3	qTNL-3	Morphological trait	Culm/leaf	C563	R518

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus