>Osa03LNT0200100.2

GACACGAGAAATAGCCTTGGCCATAGACACCATTATATTCTATCAAGATTTTGTACCAATTGACACGGGAATGTTTGGTACAGGATGGATCCAAATCCAGAATAGGGGCTCAAGAACTAGTGGTGAGGTATTTGAGCTGAAACCCAGCGGTGGATGGAATTTTGGTCATTACCAATCTGTTATCTGTATATGCTACTGTCTCTGAGACTCTGTCTGCCTGCGTCAGTAGTACAAATCTGAGAGGTCAAACTGCAGCGCAGCAACTGTATTCCACGAGTTCAGCTTGTGGTCTTCGTCATAACCTGAAAACCGATGATCCCACCGTCATGTATTGAGACCGGCATGTGATCTCTTCCTGGAAGTTAATTTTCTCCTCCACCCCTTTATATCTCCTTCATGTAACAAGTTGATGATTTCAGTTCTCTTCACCCCTTCATCTATTCACCCTATCCACCTCCACCATGGGTAAACTTTGAGAAAAAAAAATCACCTGAAAAAGAAAAGCCATGATGATATCAGTTAACTGCTGACAATTCAGAATGTAAAGCAGCAATGTAAATATTGGGTGTGAATGTGTGATTCTGGAAAGTACTCCAAGGAAGAAAAGGGTGGGTTGACTAGAAGTACTTCCAGAGAAGAGCATGCCTCCAGGTATTCAAAGCGTGGATTGTAGTCGTCACCTCGCGGGCTTGCAGCAATCACTCAGCTGTGCACATCATGCTCTTGCTTATTAAAAAAGTACATTGCATCCTGAAAACGGAGTGGCTCATTTCCCCAAGAGGTCCAACCAGAAACCAACTCTCTGGCAAAAAGCTCAATGCACCTTGCAGGTTTAGGACCTGGTATATATTCTGAAAGTAATTTCTGGAGGGGAGGTTTCCTTGAGTGAGCACCTGGTACACTCATAATTACCCGCCTTTCTTCCAAAAACTTGAATTTTGAACCTCGTACGGCCTCTTTGTTAAGATTTATGTAGCCAACAAGGAGGCACTCATAAGGCCTGTGATGGAGCAAGTCTAGATTGCCAATCAGCGAACCATCTGGCTTCACCTTCAGCCAATAGAACACAGTATGATCTTTCACTCCCCAAGCAGGAAATAACTCCTCCTCAACAAACTTCCAAAGTTTCTCCCGATTTGTAATCCACAAAACTAGAAGAGCTCCAGCTGGATGGGCAAGTTCTTGTACTGGAAGGTACAAGAAATGTCTGTTGGGAAGTGTAGGGTACCTAGCGCGTGAATAGTTGGATGAGTGAAATGCCTGGATGACAATATATTTAAAGTGATTTCAAATTGAACGGATGAAAACAATAAAGTAGAAAATGAGTATTTGTTAATATACAAATATTTAATTTTCATGAGATTACTCAATATATACTCAGCTCAGAGTTTACTATGGGAGGACGTAATATCAGCATAATATGTCTCGCGGTCAGTGCATCATAGTATAATAATCCGTGTAATCCGTGAGACATGATCATGTGCATTGCATTCCTATGAAAAAATTTCAAGAACTAAGACATGATATACCCTAGGGATTGCAAATGAAACATATCGGAGCCATACCAAAAAGGTCAGCACATCCTAGATACCCCATATGCTTATCATGATTTATGCATCGGCTGAAGATCAGCTAAAGAGAACAACTGCACCTACAGTTTTAGTGGCTAAACATAATAACAAGCATAAACAGGACATGTGTTCAATTTCAAACATGTCATATATATAAAAAGTTAAAAAGTGATATCTGAGACTACCATGTAAAGATTATAATGTCATCCATCACAATGTGAGCCAAAGCTTAAGTGGTTCCCCATCTAGACACAAGCTTTTGCTTGCTTGGAGGAGAAAAGAGATTTTCTCTAAGGAAATGCCTAACTACACAAACGAATCAAACCCAAAAAGTAGCAAACTTACGCTACTTTCTGACGAACACATCCATTCTCCCAAGGTGGATCAACAACTATAAGGTTGTAACCTTGATTGTAATTATTAGGTTGTTTTTTGTGATATGTTACTGCATACCAGGAATTAGACCACGGACATGTTTGAGGTCAGTCATCAAGAAACAACATCGTCTTGGTAAAATATAACGTCTATCCTGAAATTCTCCTTCTGCGTCATCATTTTCTTCGATACTGATTGTACTATTAAACAGTGGAGTGGATGTCTTATGGCAGATACCTTCCTCACTATCCTCACCAGAAGACTTCTGAAAGCAAAGAGTCATCTCACATAAAGGCGCTCGCCATGAGCTCCCAAGTTCAACAAGATTCTTCTCCAAATTACTTTCCACATCAAGCATGCGCACATCTTCCTTGATCATCCTCGGAAGGAACTCCAGTAGATCTTTAGCCTTAAGCAGTGATTTGTGTGCGCTCGATAGCAAAGGCCTTGCTTCCTGGTGCCGAGCTTCTGCCATCCGCTCCACTTCGTTCAGTTCCCTGGGCTTCGGCTGCCGCTGCCGCTTCCGCTTCCGCTTCTTCCGTTCTGGAGACGCCTCCCCAGTTCGTTCGGTTTCCGCTTCGCCTCCCTGACGCGACGTGCCGAAGCTTCGGGAGTAGTACGCAGAAGGGACGAGGCGGAAGCGGCGGTAGGACGCGTTGAGGATGCGGACGGGGTCGAGGAAAGCAGCGCCGGATTCGGCGAGACGGTAGATTCCGGTGGCCTCGAATGCCCGGAGCTCATCGGACTCGGAGATCCCCATCACCGGCGGCGGCGG

Explanation	CPC Score
noncoding	-1.28824

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0200100.2	3	5203064	A	C
Osa03LNT0200100.2	3	5203343	C	T
Osa03LNT0200100.2	3	5203730	T	C
Osa03LNT0200100.2	3	5204390	C	A
Osa03LNT0200100.2	3	5204496	A	C
Osa03LNT0200100.2	3	5204544	T	A
Osa03LNT0200100.2	3	5205234	T	C
Osa03LNT0200100.2	3	5205750	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0200100.2	osa-miR5538	Translation	5.0	8.823	1	22
Osa03LNT0200100.2	osa-miR1429-3p	Cleavage	4.5	20.438	1	21
Osa03LNT0200100.2	osa-miR444b.2	Translation	3.0	17.734	1	21
Osa03LNT0200100.2	osa-miR444c.2	Translation	3.0	17.734	1	21
Osa03LNT0200100.2	osa-miR1440a	Cleavage	4.5	23.033	1	20
Osa03LNT0200100.2	osa-miR1860-5p	Cleavage	5.0	10.978	1	21
Osa03LNT0200100.2	osa-miR1860-3p	Translation	5.0	21.371	1	22
Osa03LNT0200100.2	osa-miR1860-3p	Translation	5.0	24.06	1	22
Osa03LNT0200100.2	osa-miR2868	Cleavage	4.0	10.663	1	20
Osa03LNT0200100.2	osa-miR2919	Cleavage	4.0	8.892	1	19
Osa03LNT0200100.2	osa-miR5162	Cleavage	5.0	18.392	1	24
Osa03LNT0200100.2	osa-miR5507	Cleavage	4.5	9.334	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0200100.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0200100.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0200100.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0200100.2	3	qTNL-3	Morphological trait	Culm/leaf	C563	R518

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus