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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0200800.1

CAGAGCTGAAGCTTGTAAATAACAAAATGAAATCACATTTGATACACTAGTATTACAAGGGTATAGGAAGAATGCCGGCACGGCGTTATAATTCTTTTCCCATATGCTCTTCATGCTGCCCATCCAGTGATGGTTTAAACTTTGTCACTGTTCCAGAATTTCTAAACGATCCCTATCTAATGTCATCTATTCGGGATGATGTCGTTGGAGCCTTCTAGATCACAAGAGCGTTCAGGACAATCCAGCTTACCCCACCGTGCATTTACTCTCTGGCAAGGAAATATAGGTTTTCCAAGGCTTCGATTGACCACATTGTGCACGTAGCATAACCACTGAGAGAATTCAGCCTGAGATCCTGCCTGCACAGGATTTGCTTTTAAAACTTCTTTGAAGTGTTCCGCACATTCTTTGCAAGGATAGAGTCTAGATATTATAGCCATCAGCTCTCTCGCATCGCGTCTTTGTTGCCTGGTTGGTTCGTCAGGAAACTGCGCTGCGATGGTGTGGAGCAGCATCCACGTGGCCCTGCCGACCTCCTCCTTGGTCAGGGGCGCCGCCTTCGAATCCTTCTTGAGGACCTCCGGTGGCGGCGGCGGCGGCGACGGCGGGGTGGGCGGAGGGGAGAGGGAGAGGGAGAGGAGGGGGCGGAGGCGTGCTTCGTCGGGCGCGGCGTCGGGGGCAATGAGGAGGCGGCGGGAGAAGGCCGCGACGGTGTGGACGACGGGCTCCAGCGGGTTGGAGCCCCACCCCCACGCTGGAGGCGGCATCGCGGCTCGCGTGGAAATCGTACGACGACGGCGACGGCGGCGGCTGCGGATGGGTGAAGCCGTAAGCGAGGTCGACGTCGACGAGGAGGAGAAACTCGAGGGCGTGCGGTGCGGAGGGCGTGACCGCGTGAGAGGGGGGAGACAGCT

Coding Potentia
Explanation CPC Score
noncoding -1.09183
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0200800.1 3 5573881 G A
Osa03LNT0200800.1 3 5575577 T G
Osa03LNT0200800.1 3 5576289 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0200800.1 osa-miR5534a Translation 4.5 17.197 1 21
Osa03LNT0200800.1 osa-miR5534b Translation 4.5 17.197 1 21
Osa03LNT0200800.1 osa-miR2930 Cleavage 4.5 17.263 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0200800.1 3 nan Morphological trait Dwarf RG100 RG450
Osa03LNT0200800.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0200800.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0200800.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0200800.1 3 Gy3a Others Others RG266 C63
Osa03LNT0200800.1 3 qTNL-3 Morphological trait Culm/leaf C563 R518
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus