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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0201600.1

CATCGTCCCAGTCGGGGACGATCTTCCGTGCGAGCTCCCACTCGTCGCGCGGCCTCGGGAGCTTGAGGGATTGGAGCGCGGACTTGCGGAGGAGGTAGGCCTGGTCGGCGTCGTAGTGGCCGCGGAGCGCGCTCGTCAGGCGCGGGAGCGGCGCGAGCATCTCGGCGTAGCGGCTGCCGCCGCCGGCGAGGGTTTCGGTGCGGGAGGCGGAGCGGAGCGGCGAGGGCGGCGATGCGGCGATCGGGTTGTCGGTGTGATTGGGGGATAGTGGCGGTTTGGATCGCGCCGCGACGCCAAGGCCCTTAAAAGGGAGGAGAGGAGAGGCCTCTGCCGCGCGCAAGCAGCTTGCCCCCTACGAAAGCGCCGGAGGCGGTCGCGCCGGCGGGATGGTGGACTACTACTGGTGGTCTACTGGTGTTTTGGATCGGTC

Coding Potentia
Explanation CPC Score
noncoding -1.15211
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0201600.1 3 5939624 G C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0201600.1 osa-miR1846d-5p Translation 5.0 24.603 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0201600.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0201600.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0201600.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0201600.1 3 qTNL-3 Morphological trait Culm/leaf C563 R518
Osa03LNT0201600.1 3 Gy3a Others Others RG266 C63
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus