>Osa03LNT0201700.2

CAACGAAACCATTTGCTATATCATTTAATAGTATTATTATCAAGTATAGCTTTTAAAGTATATCCCATGCGATTACAAGATGCAGTGCAACTCCATGGTGAAAAGTGGCAATTCGGAACGGAAACAAACGAGATATGCAAAGCATCCTATGCAGTATGTCGAATTGCTCTAATAATATCGCGTTGAACAGATACTGCTACCTTCGCCTGCTTCCTCCTACTCGAGCTTCTCTTCAGAGGGACCATGAACCCAATGTGCCCTCCACACGATCGAGTGTGAAAGAAGTCGCTCTGTTGAGTAACCTTCAACTTGCAACTTTGAGATAAAAGTGTTATATTTCTCATCAATCCATTGGCGAGCCTCCGCATGCCCAGATTTGCTCTTCTGCATCAAATGTGCTAACACGAGTCCATGTATGAAGGACATCAAAATATCTGTTGCCGCTGCCTGCTTGTGGATGAAAATGTGAACACTGCCTTCCTTATCCAGCAAGAAATAGTTCTCATTTCTATAGTAGGGCCTTGTTTTTGCAATCTGCAGCAAATCAGGGTGTGTAAGCCTTGAGGCTTTAGCACCTAAATGTACATGCTCATGTGGCAGTTTAATTCTAAGAAATTTCCGCCAGCTTGACCAATATGGAAGAATATGCTCTTGCTTGGAAACCTGTTGTGGTGTGAGGACTTCACCATTGTCCATGAAGTACTGCAGCAGGATGGAACTTCTCTCATAATTTAGTGTTGTGAGTGAAAGTGACTGCACTGCCTTGTAATTTGCATACATATGGAATATCGTTAGAGAAAGGAATGAAACCCATACACCCAAAGCATGCCCTCTGGTAACATGGGCAAGAAGCATTCCCAGTCCCATTCCTAACATTGTTGCAAGTGTCTCCTGACTGCCCTCCTTTGCAGATATATCAGCTGCATTATTGGCAAGTGCAAAATGCTGGGTTAACGCTGCTCTAGTTGCTCCACTAGCAACACCAGTGAAGGATCGAGATAGGCTGCCTAAACACATTATAACAATCAATGATGAAGGAAACAGAGGGCTTAAGAGATCCATCAACATCCCAAGGTCATTCATAAAGTCTGCAACTAGGCGCCACATTTTAGCATTGCTATCAAGGTTAGATCCCTGATAAAAAGTGAACAGTATACCACCGAGCATTCCTGTCAAATCCCTGAGAAACCACTGAAAAGTGGCACCTATAACCGTGGCAGATTTCTCACCTACTCCAATAGCGCCTAAAAGAGCTTGAGTAGACAGCATTGCACGGATGTAAGTCGAGAGACCCTGCAAGGTATCCCACATCTGGAACGGGACGTAATCCGGAGTGACGCTCCCAGGAAAGCCCTCGGGCACGAAGGCGCCGAGCAGCCGGCCGCCGACCCGCCCCCACCGGCTTCCGAACCTGCGGGAGGCGAGGGAGGAGGAGGGGGAGGCGGTGAGGACGGCGGTGCGGGAGAGCGCGGCGGCGGAGGAGCCCGCCCACTCCTCGACCGTCACCCACCCCGCCGCCTCCTCCTCCGCCGCCTCCGTGGCCGCCGCACTCCGGAAGCGGGAGGAGTCCATGATGCCAACCAGTCGCCCACCACCTCGTAAGCCGGCCGCCCACGCCGGCGGCGCGGATCTGGATCGGACGCCGCCCCGCGCCCGCCGCCGCCACGGCTCGGAGCTCTGCTTCCGCGTGCAGTGCAGGGCACGTCGCGGGCTTCTGCTCAGCTCAAGAC

Explanation	CPC Score
noncoding (weak)	-0.8794

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0201700.2	3	5955762	A	C
Osa03LNT0201700.2	3	5955852	C	T
Osa03LNT0201700.2	3	5957100	T	C
Osa03LNT0201700.2	3	5957452	A	G
Osa03LNT0201700.2	3	5957828	A	T
Osa03LNT0201700.2	3	5958549	T	G
Osa03LNT0201700.2	3	5958924	C	A
Osa03LNT0201700.2	3	5959244	A	G
Osa03LNT0201700.2	3	5959790	T	G
Osa03LNT0201700.2	3	5960334	T	G
Osa03LNT0201700.2	3	5960358	G	A
Osa03LNT0201700.2	3	5960410	G	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0201700.2	osa-miR5812	Translation	4.5	11.731	1	24
Osa03LNT0201700.2	osa-miR5832	Cleavage	5.0	23.371	1	21
Osa03LNT0201700.2	osa-miR6251	Translation	5.0	16.376	1	21
Osa03LNT0201700.2	osa-miR394	Translation	4.5	19.486	1	20
Osa03LNT0201700.2	osa-miR416	Translation	5.0	10.366	1	21
Osa03LNT0201700.2	osa-miR1866-5p	Translation	4.0	9.617	1	24
Osa03LNT0201700.2	osa-miR2869	Cleavage	4.0	24.309	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0201700.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0201700.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0201700.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0201700.2	3	qTNL-3	Morphological trait	Culm/leaf	C563	R518
Osa03LNT0201700.2	3	Gy3a	Others	Others	RG266	C63

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus