>Osa03LNT0202200.2

GAATCCATATATGAATACCCACCATTTGCCAGATGATCTAATGTTTATCAACAGCTAGCAAAAAAAAATGCTAGTTCACCTGTCTATCCATCCACAACACTTATTACAGTGTTACCCCACCATGATTTCCTACGTACAGGTGCAGATAGGCTACACATGGCACCCCTGTGTTCATTCTTTGTAAGCCTTCTGAATTATAATGATGACTACAACAACTCTACAAGCCCACATGAAGAAGGGGGGTGGCATTAGCCATTTTACTGCTAAAGGTTATAACTTTGCAGGATTACCAAGCGCATATACAAGACAGGGGATAACTCAGAGAGGATCCTCCTGTTTGATTTCGGTGTCATCTTCTATTTTCCCAACTTTAGTTGGAAAGTGAGATAGGACCAAATGCCCCTCGGAATACCCATTCATCAGGAGCTTTCCTATCTTTGTCTTCCAATCTGTGCCAGATCTCTCGTTCCACCTGTCATGAACTACCCGGTCACGGTAATTGAGCATTGTGCCAAGCCCAGAATTTGGTACCCAACCATATTCTTCCAAAACCCGCGCCTCTCCTTCCGTCAAATCTTCACCAATCAATAATGGCCTATTTTCAATCAGAGCTGTCCTGCCACAACCACTAAGCTTCATTGCAGTAACCATCCTTTGGATCTGCCATTGTATTGGCAGTGATTTCACAATCTCAAAGAAGTATGTCGCATACCCATATTCCGGTCGCTCAAGAACAATCCTGTTATGGCTTTTAAAAATAAAAATAAATGATTGCAGGTCTCTACACCATCCCCATTCAACAGGACAATCACGAAACTGAAGATAGCGGGACTGCTCGATGAGAGAAATTAAACAGGTCAAGCAGTATATAGCCTTTTCCCCCTTCTCATGCCTAAGTGCAGATTTCAACAGGGATGTTCTTTGCGGAAACAATTTTGTAATAACATTTTCAAGATCTTGAAAGTCACTTTCTGTGCAGTCTGGGACCATATCATCTTCTTCTTCAACACCGTAGAGTTTAATCTCTTTAACCAGTATTCCTTTGTCCAGAAGAATCTGCAGTAGTCCTGGGGCATCTTCTTCAAGTGCCGTTTCAATTGAATCCGTTGCTGTTTTTCTCCTTCGCCTTTGACGAGAAAAGTAAGCAGTACCCTCATCATTTCTGAGGGAATCTTCTTCAAGCGTCTTTTCACTTGGATCCCTCAGAGTCTTCCTCCTTTTCCTTTTTCGAGAACAGTAAGCAAGGACCCCGTCATGGTTTAGAGTATTGGTTTTTTTGGCAGTGAGCTCTGCGATACTGATAGAAGTGAGACCACACACAACTAGAGGTAACTCACTCCCGGTAACTTCGCTTTTTATTCGTGATGATGGCAGTAGGCCTTCAACATGAGAATTCTCTGGGTTAGATCTTGCTGCTTCTGATATTCTTTTGGAGATCGCTGAAGAAACAGAGTTTATAGACCCAACTAGATTAGAGCCCTCAGTGCCATGATTTGGATCTGTTCTCTGTACAGAAGATGTAATTTTCTCTGTGAAATCCCCTTCCAATGCAGGTTCCAATTTTATGTCAACCAAAAGGGTCCTATCATCTGTCCCTTCCAACTGAATGTTTTTATCCCCAAAAGTTGGTGTTGAACTTGAAGAAGGGTCGCGACTATAAATAAGAGTCTTGCCGTTTACCAATAGATCATGAGAGCACACAACTTGACATTGTGGTGGAGCAGCAGAAGATGATGTACTCAAGAAACCTGATTCACATCCAGCCTCATGACTTTGCTGGTTGTTTGAAAGACCTTCAGTTAGCAACCTCCTGTTGTTATCATTGTCGATACTACCTATAATGGCCGGTGCAGAAGAAATTTCCTGCAACATGCTATACATACCATCCCTGAAGGCAGTCCCTTCATGAATTCTTTTAGGAATCATCCCATTAGTTCCAGGCTTGCATGAATTCTCCAAACCATCAATTGCACATTGTTCAGAAGATACACATTGAAATAACTTAGTTTGTCCAGATTAGGACATGTCCCTGTTTGCGTCTGCTTTTGCTTGTTTTCATTGCCTTGAACAGAACTATTTTCAGTAATCATATTAAAAGAATGATTGTCCAACTGTAATTCCTCTTTGGAATCATCATCGATTGCAGAAGCACCCTGTGCTGACTGAGCGTGAGATTTCTCAGCCCATTTAAATTGATTTTTTTCTAACTCGTAGAATATCTTTGACACCACCAATTCTCCCTCATCTTTCTCTGTGCTTTCGATATGATATTGATGTAATCTCCAGTCAGTGATCTGAGGATTGTTACCATCTGTCTCGTAGGCATACAATACAAATACTTCCTTGCAACCTTGAAGATTCCCATCCAAAGTTATTGATATAGGATTTCCACTTTTTTGCCATCTGATACATTTACTGTTCTCATTGGCGCACTCCTTGAAGTTTTTGTGAAAGAAATATGATGCACATCCATCCTGCCTAATACCTGGTATATCTTGAGGGTGAGTATAACCAAATCCTATGGTTTCATCAACAGATTTAATAAACTCGTTGATAAAAGGATGACGACGAGCCTGACCATTTCCAACTTCTGCAGCCAGATGCCAGAGTAGATCGCTATCGGTAGGATTAAACTCTACACCTCTGGGAAGACCTGGCCAACCCTGC

Explanation	CPC Score
noncoding	-1.16641

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0202200.2	3	6358787	T	C
Osa03LNT0202200.2	3	6359145	A	T
Osa03LNT0202200.2	3	6358963	G	A
Osa03LNT0202200.2	3	6358210	A	C
Osa03LNT0202200.2	3	6359390	A	G
Osa03LNT0202200.2	3	6360410	T	C
Osa03LNT0202200.2	3	6360525	T	C
Osa03LNT0202200.2	3	6360541	G	A
Osa03LNT0202200.2	3	6362245	T	G
Osa03LNT0202200.2	3	6363359	G	T
Osa03LNT0202200.2	3	6364153	T	A
Osa03LNT0202200.2	3	6364673	T	C
Osa03LNT0202200.2	3	6361679	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0202200.2	osa-miR5541	Cleavage	4.5	18.079	1	21
Osa03LNT0202200.2	osa-miR5790	Translation	5.0	12.431	1	24
Osa03LNT0202200.2	osa-miR1319b	Cleavage	4.5	14.127	1	24
Osa03LNT0202200.2	osa-miR5836	Cleavage	4.0	16.817	1	21
Osa03LNT0202200.2	osa-miR5512b	Cleavage	4.0	16.194	1	21
Osa03LNT0202200.2	osa-miR530-3p	Translation	5.0	20.415	1	21
Osa03LNT0202200.2	osa-miR530-3p	Cleavage	5.0	8.44	1	21
Osa03LNT0202200.2	osa-miR535-5p	Translation	5.0	13.132	1	21
Osa03LNT0202200.2	osa-miR395v	Cleavage	4.5	5.718	1	21
Osa03LNT0202200.2	osa-miR1852	Cleavage	4.5	13.944	1	21
Osa03LNT0202200.2	osa-miR1878	Cleavage	4.5	13.561	1	24
Osa03LNT0202200.2	osa-miR5147	Translation	5.0	15.233	1	21
Osa03LNT0202200.2	osa-miR5339	Cleavage	5.0	13.342	1	21
Osa03LNT0202200.2	osa-miR5491	Cleavage	4.5	15.589	1	21
Osa03LNT0202200.2	osa-miR5492	Translation	4.5	13.443	1	21
Osa03LNT0202200.2	osa-miR5494	Cleavage	3.5	17.691	1	21
Osa03LNT0202200.2	osa-miR5512a	Cleavage	4.0	16.194	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0202200.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0202200.2	3	qTA3	Physiological trait	Eating quality	nan	nan
Osa03LNT0202200.2	3	qTNL-3	Morphological trait	Culm/leaf	C563	R518
Osa03LNT0202200.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0202200.2	3	Rhz2	Others	Others	OSR13	OSR16
Osa03LNT0202200.2	3	Gy3a	Others	Others	RG266	C63
Osa03LNT0202200.2	3	qTAA3-1	Morphological trait	Shoot/Seedling	C316	C63

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus