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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0202800.1

AATCCAAACAGATTAATCCACATAGTAAAGTCTCAGGTTTTACTACAATAATGCCAATCACGGCAAGTAGCTTAGCATAGTCAAGCTGACAACATCGGTAAGATGCATCTCCATCCTCCAATCCAAGCAGAGTGGATGACGAGTTGGTTGTGCAGCAGATGAGTGAAAAATTCTAGCATATGAACTTCAGCATGGGCAGTCAGTTGTCCCGGTAAAAAAAATAGCTATGGCTCCTCAAGGGACTCCTTGATCAGCTTCTCCGTGAGGGATTTCGGGAGTCCCATTACACTGTCGATGGTGCCAACAATAGCTTCCACAAGAGGTGAAGTCAGCGGGTGCTCTACCAGCAGGCCACCGGCAACATAGAAGACATCGCCCTCCTCAATCAAACTCTCAACAACTTCATCGGGTATCTTATGGAAATAAACTTCAGCTTTGTCCCATCCTTCCTTTCTGGCTCCACTTTTCACATTAGTAACAAGAACAGATCCAATTGTCGCTGCATGGCTTTCGGAGTATCCTTTGATGAACTTTCGTGCCTCTTCTGGGGTGCTAGGTTTTTCTCTAATCACTCCATCATGAACCACAACCTGGTCTGCAGTTATCAACAGTGTAGTCTCTTGAGAATCAAGAATTTCCTTCATCATCCCATTATCCCTCAGCTTCTCCATTATAGCATCTGCTTTTGCATGAGCCAGCGCGACCACAAGCTCCTCCGGCTTCTCCTTTCTGATCTCCTTTTCGTCAATATCCGCACTAAGAAGCGTGAAGCTGTATCCCATCTCGGCGAGAATCTGGCGGCGCGACGCCGACGAGGAGCCGAGGATTAGTCTGAGAGACGATGAGGCGGCCATTCTTCGCTCTTTCCTTCTCCGAGAGTAGTCGGCGGCGAGTCCACCAAGGAGGCAAGAGCCCAAGATAGCAGGAAAAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.700815
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0202800.1 3 6874554 C T
Osa03LNT0202800.1 3 6874803 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0202800.1 osa-miR5526 Cleavage 5.0 9.504 1 21
Osa03LNT0202800.1 osa-miR419 Translation 5.0 11.624 1 21
Osa03LNT0202800.1 osa-miR530-3p Cleavage 5.0 14.613 1 21
Osa03LNT0202800.1 osa-miR3979-3p Cleavage 5.0 21.769 1 20
Osa03LNT0202800.1 osa-miR5147 Translation 5.0 23.112 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0202800.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0202800.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0202800.1 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0202800.1 3 Rhz2 Others Others OSR13 OSR16
Osa03LNT0202800.1 3 Gy3a Others Others RG266 C63
Osa03LNT0202800.1 3 qTAA3-1 Morphological trait Shoot/Seedling C316 C63
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus