>Osa03LNT0203100.1

GACCAATATAGTTTGCTGCCAATTACCATATACCACGACCGTCAAAACAAGAAGCTGAAGCATCCAGCACAGTAAAACACGGTTCAACAACATCCAGGGAGATAACAACGGAAGCATAAAAGTCTAATATGACGATTGATTTAACCAGTCCATGAACCCGGCGAGTGACGCTCTAGTTCTTGATCTTCTTCTTGGGCCTCAGCTGGTTGCTGTGACCACACTTCTTCTTGCGGCAGTTGACAGCCCTAGGGTGCAGGCGCGCATAGCATTTGCGGCAGATCATCTTGTCCTGGTTGTACTTGCGGGCAAGCGCCTGAAGCGACGGCTCGATGATACCGCCACGGAGCCTGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCCAGGGTGCGTCCGTCCTCCAGCTGCTTCCCGGCGAAGATCAGCCGCTGCTGGTCCGGCGGGATTCCCTCCTTGTCCTGGATCTTAGCCTTGACATTGTCGATGGTGTCGCTGCTCTCCACCTCGAGGGTGATGGTCTTCCCAGTCAGGGTCTTCACGAAGATTTGCATCTTGGCGCCCTAGCTGCTGCTTCTTCTTCTTCCCCGGGGCTCTCTCCCCTTTGTCTCTCTA

Explanation	CPC Score
noncoding (weak)	-0.306372

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0203100.1	3	7102254	T	G
Osa03LNT0203100.1	3	7102403	A	G
Osa03LNT0203100.1	3	7102866	A	G
Osa03LNT0203100.1	3	7103254	C	T
Osa03LNT0203100.1	3	7103368	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0203100.1	osa-miR5795	Translation	4.5	21.372	1	22
Osa03LNT0203100.1	osa-miR1437b-5p	Translation	4.5	20.214	1	21
Osa03LNT0203100.1	osa-miR3979-3p	Cleavage	4.0	17.765	1	20
Osa03LNT0203100.1	osa-miR5158	Translation	5.0	14.62	1	24

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0203100.1	3	Gy3a	Others	Others	RG266	C63
Osa03LNT0203100.1	3	qTAA3-1	Morphological trait	Shoot/Seedling	C316	C63
Osa03LNT0203100.1	3	Rhz2	Others	Others	OSR13	OSR16
Osa03LNT0203100.1	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0203100.1	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0203100.1	3	qTA3	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus