>Osa01LNT0017600.1

CCAAAATATATTTACATTATAGAAAATGTTTACACATGCATATAGAAACATATGTAGTCATGTATTAATTACAATCCATTATATGTCCTAGCTAGCTACGATTTCGACGTAGCAGTAGTCGCTGCTAGCTCAGAAGATAAGGACCGGTGAATTGTGTTTCCGTCGTAGTAGAATTCACCCTTGGGATCAAGGATTTCTTCATTGATGAATCCCATGAGTTGTTCTTGAACCGCTGCGATAAATTCCTTGTGTGTGGTCAGGTTATCC

Explanation	CPC Score
noncoding	-1.13527

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0017600.1	osa-miR5797	Cleavage	4.5	16.083	1	21
Osa01LNT0017600.1	osa-miR396e-3p	Cleavage	5.0	17.003	1	24
Osa01LNT0017600.1	osa-miR444a-5p	Cleavage	5.0	22.853	1	21
Osa01LNT0017600.1	osa-miR1428e-5p	Translation	4.0	19.877	1	22
Osa01LNT0017600.1	osa-miR1428f-5p	Translation	4.0	19.877	1	22
Osa01LNT0017600.1	osa-miR1428g-5p	Translation	4.0	19.877	1	22
Osa01LNT0017600.1	osa-miR5153	Cleavage	5.0	18.24	1	24
Osa01LNT0017600.1	osa-miR5500	Translation	5.0	19.042	1	22

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0017600.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0017600.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0017600.1	1	nan	Morphological trait	Root	RM23	RM306
Osa01LNT0017600.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0017600.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0017600.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0017600.1	1	nan	Physiological trait	Source activity	RG532	RM472

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus