>Osa03LNT0207800.2

GCAGCCAGCAGAAAAGTATGTACTATTTGACTTGAAAATAATGTCTCGCAATGAATAGTTGAACCCTCACTGATGTCAGCTCGATGTAGTAGTAGAGTAAAGATTTAGCATTCATGATCCGATAGAAACGTCAGATGGTTTGCTCCTCCTTAGACTCGACAAAGTGTCCAAGTGGATCTCTGCAAGGGAACTGGAGGTCACAAATAACCATCGCATCTAAGTTGTTACCGATTGCCATATTAAAATTAAATGCGTGGTCCACTCCATAGCACAAATTTCATCTGGAGTCAGGCACAGAAAATAATCATATGGGTTTTATTTATTGAGCACTCCAATGTGGGGATCGATGAGCTGCTTTCAGCTATGGAATGAATTGCGTAGCTCTCCAGCTGTCAAAGCAGATGCCATGTTGGATATGTAGGTGGTTCTTAGTTATCTGTCTTCGTCTTGGCCTGCCTGATCTTCCTGTCCAGATTGTCGCACGAATTGCCCGCGGATCCGAGGGCGCTGCTCAGCCAACCTCTTTCTGCTCTGATAGCGCACCTGAAAATAGGCGGACAAAGCCATCAGAAAGATACCGGTTCAATGCTAACCTTAGTCAGGCACAACAGCAAGAAAAAAGTGTCTTTTTCCTCAAAAGTGAAACAACAGTGTCAAAACCGATTATTGCCTAAAGATCATACTCCCCTCATTAGACATTATGAATTACTTTGTGGAATGTAGTAATTCACTGGTTCGATCCTGGTACTTATTAAAGTTTGGCCCACCCTTGGAAGAAACAACACTTTTTTATACTCTTTTCAAAAGTAGTGTTCACATCCGTACGAAGAAATTGTATCAATTGTCATTTTGTTTACCCAATCATTAGAATATACTACCACTCGTTTTTGCTATACTGAGTAGAATTCATAGCCCCCTCAAAGAGTTCAAGTGATTAATACTACTAATTTTAGGACTCATGACTTTGATAGGCGTGTAACTGAAAACAGGCTACCTTTTTTCCAAAGTTCCTCACTTTCCGTTTCTGTCTGAATTTGTTCAATGCAGCTTCTCGGTAACAGACCCCATTCTGATACAAGTCATTACCACTACCGCTCCCACTTCCATTGCCACCTCCAGCCCCATTTTCATCCACGATACCATTAACAGTCTCCATGTTTGGCCTCCCAACATTGGGAGCAGTACTAGGTCCTCTTTGCCCATTGTTTCCATTATGGCCACCTGAAAAGCTCCCGTTCACACTATAGTTTGCCGCATGACCTTCAATGGGAGGATCAAATACATTGGATGAACCACACTGAGCATCTGATGATCCTCGCTCAATGGATGGCTGCTGCTGCTGCTGTGTCATAACATGGACGTAGTAATGAACATGATGATGGTGCTGCATAAAGCTATTTTGTACATCTACAGGGTGGCCCACATTAACTCCATTAGCAATTCCTTCATCAACTTTGTCTTTCCCTACAACATTAGCAGGTGACGTTTGACGCTGCACAGGATGGAATGCTGATGTATGTTGGGTAGCTTTGACAGCTGATGGTGATATCACTTTTCCCCTGTTTGAAGAAGGTTTTGTGATGGCATTCTTAGTACTGGAGCCCATGTCATTGTTGTTGCTACTACCATTGGAGCCTTGCTTTATTTCAGCAGCATCTGAATTTGACTTCACCTTGCAGTTGGAGTCTGTTTTCAGAGCCTCTGAACTGTTATCTTGAGGTGAACAGCTTCCCCCAAATCCAGCTCCACCTTGATTAGAAGCCACAGTTGTATGGTACCTTGCAAGATAAGAAAACATTAGTACGCAATTTATTGCCATGTTCATAACTCAGGAGTGACACTGATATTATTTTTTGCACCTGGTGAAAGCTGAGAGATCTGATCTTTTCAGAATATTTCGTTCATCATGGATTTCAGTTGCAGATCCAGTTGTTTTCAATCTCTTCAAACCCAACTCTTCAGATGTCATATCAATGAGAGAATCACGATTTTTATCATTTCCATCTGGAACCTTGGAGGAGCAATCAGGAGCATTATTGATTCTAACTACTTGTTTGTCATCTGTGCTTCTGGCTATTGAACTAATTAAATCAACAGTTTGAGTAGTTGGTTCATTCTGTGTGTTCCTACTATCTGTTTCTCTTGTTGTTTTACTTTGGGGCATGAGAGTTTCATGCTGTTTTTCTGTTGGATTAACGGACATCTCTCTTGGAGAAGATTGGTACTCCATACTAGAATTTCTAGGAGCTCCTATTTCTAAGTACTTCCCCATGGAGTCATCGTTATTTTCTTTATGTTTCTTTCCGCTCCTTTTATTTGCAGTCGGTAACCACCTGTTGCTGCATATCTCTGATGTGGGGTGAATTACTTGCGCACAAGTACTATCTGGTAGATCGGATGGTTGATCAGGAGACATTTGTTGTGGGCTGTCAATCTCCACTGCACGCTTTGTCCATGAACTTTGAGTGCCACTGCCATTATCACTGCCATCCCTAGCGTTGTGTCCAACACTTAAGTCGTCATCATCTTCATCATTGTCATCATCATCCTCGTTGTCATTATTGCTACCGCTGTTATTCTCATATTCATCATCAACCTTTGGTTTGGTACACTTTTGTGTTCGGATGCCACTTTCGCTTCCACTGCCACTGGAACTGTGGCATCGTCTCCAAACATGCTGCCAAAGGTTCTTAAGTTCATTCTTACGTATAGGCTTCACTAGAAAGTCAACTGCTCCTTTTGACAAACACTTAAAGACTGTACCCATTGAGTCATTCGAAGACATCATAATCACGGGAATATCCTTGCAAATTTTGTGGCTTGTGATCTTACTAAGCAGACCAATGCCAGACAGACGTGGCATTACGACCTCGGTCAATACAAGGTCAATGTGGTTTTGCAGATCTTCAAGACATTGCCATGCATGTAGCCCATTTTCAGCAGGGATAAGAAGCAGTGCGCTGACCACCTGACGGGTAGAGTCATCATTCTCCACCAGCAAGACCCTCAGTGTCTTCACAGGGAGGAACCTCTCCCACCGGACAATCTGCACTTGGTGCTCCTTCTGTTCATCTGTTTGCTGGGGCTCTGGTGGTGTACTGTGCCCATTGGGTAAGTCCTCTCCCATGCCATTCCTCCATTCCTCCTCCTCTGGCTTGTGACTATGACCATTCTCCAGGATGCCATTCCCTGTCCCCTTAACATCGTCTCGGGAAGGCTCGTCCGTACCAGCTTCGCAGGCGCTACCCATCAACCAGATTGGAAGAGAGATAATGCGCCGTTGATCTGAGTGACTAGGGATAGTTCACAGATTGTGGGGTGCATCATACGCCCAACGTTAGAAAAAGCATATGCTGCACCCAGTCAGCTACTTGGATCTGCCAGAAACACACAGGAATCAAAGAGTCCAGTCTATTATGAACAAGACATGCTCGGAATAAGCTTTCTACTTTTTCCTATACAAGGTAATAAGCTACTCTTATATGCGGCAATGGTCTGAGAGGACTACTTCAAGCCGAACTGAAAGGAATACTTCACAATCAATTGCTTCCGAGTCTTTAGAAACTTGCTGTGAGTAGAGCAGAAACCAGCGCCTCCCACAAAAGTCCTACCAATTCACGGCGCTTGGGGAGCTCAGCCTGAGAGAAGAGGAAAGAAAATCGCTAAGAAAAAAGCGGGTCGCCGTACTCCTCCACCCGTGCCGGACTCCGGCGGCGAGCGGCCGAGATCCGCCGGTTTCCAGACCCCCTCGCACCCCGTATCGGAGGCACAAGCCGGCGGCGAGGAGCCGTGAGCAGCGGCGGGCACAGGCACCCGCGCGCGCGCTGCTGCTGCTACGGCCAGAGCTGGAAGCCGTGGTGGTGAGAGGCGGAAGGCGGAGGAGGAGGAGGAGGCGGTGGTGGTGAGAGGAGGCGGTAGATA

Explanation	CPC Score
noncoding (weak)	-0.908824

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0207800.2	3	9759794	T	C
Osa03LNT0207800.2	3	9759825	T	C
Osa03LNT0207800.2	3	9760847	A	G
Osa03LNT0207800.2	3	9763513	T	C
Osa03LNT0207800.2	3	9763613	T	C
Osa03LNT0207800.2	3	9764497	T	C
Osa03LNT0207800.2	3	9765224	C	G
Osa03LNT0207800.2	3	9765539	A	G
Osa03LNT0207800.2	3	9767200	A	T
Osa03LNT0207800.2	3	9767623	A	G
Osa03LNT0207800.2	3	9760877	C	T
Osa03LNT0207800.2	3	9762449	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0207800.2	osa-miR5528	Cleavage	4.5	21.628	1	21
Osa03LNT0207800.2	osa-miR5806	Cleavage	5.0	15.724	1	21
Osa03LNT0207800.2	osa-miR818f	Translation	5.0	14.168	1	21
Osa03LNT0207800.2	osa-miR818f	Cleavage	4.5	17.741	1	21
Osa03LNT0207800.2	osa-miR1861o	Cleavage	4.0	8.457	1	22
Osa03LNT0207800.2	osa-miR397a	Cleavage	5.0	20.045	1	21
Osa03LNT0207800.2	osa-miR160e-3p	Cleavage	5.0	10.422	1	21
Osa03LNT0207800.2	osa-miR167h-3p	Cleavage	4.5	23.021	1	21
Osa03LNT0207800.2	osa-miR172d-5p	Cleavage	5.0	19.206	1	20
Osa03LNT0207800.2	osa-miR440	Cleavage	4.5	6.01	1	24
Osa03LNT0207800.2	osa-miR440	Cleavage	4.5	23.133	1	24
Osa03LNT0207800.2	osa-miR528-5p	Translation	5.0	16.414	1	21
Osa03LNT0207800.2	osa-miR528-5p	Translation	5.0	11.691	1	21
Osa03LNT0207800.2	osa-miR1857-3p	Cleavage	5.0	17.178	1	21
Osa03LNT0207800.2	osa-miR1858a	Translation	4.0	11.211	1	21
Osa03LNT0207800.2	osa-miR1858b	Translation	4.0	11.211	1	21
Osa03LNT0207800.2	osa-miR1861a	Cleavage	4.0	8.457	1	22
Osa03LNT0207800.2	osa-miR2098-3p	Cleavage	5.0	10.824	1	20

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0207800.2	3	gl3a	Morphological trait	Panicle/flower	C63	RM232
Osa03LNT0207800.2	3	qBM-3	Physiological trait	Source activity	RG369	RG745
Osa03LNT0207800.2	3	qGY-3	Morphological trait	Seed	RG369	RG745
Osa03LNT0207800.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0207800.2	3	qGW3	Morphological trait	Seed	C706	C12534S
Osa03LNT0207800.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0207800.2	3	qTA3	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus