>Osa03LNT0208000.2

GATACCAGACCGCAAAAACAATGCAGGCTAATAGAAAGTTCATCGATCCATTACACACCAATAGCAATATAGCATAGCCCCAAGGGCACCAAATCCTTTCAGGTGTTAAGACTCCTTGATCTCGTCTTAAACCGGAAATATAACTATTACAACCATAGCATGACCATCCACAAGATGAACGCCAGAGACTGGGATTAAATTTCAAGCTTCAGGGGACTCGCTTGCTCTGGGCGAGCGTGAGCCGCCACGGCTACCACCATCACCATTTCCATCCCTAGGGCTCGGGCTGCCGTTGTCCCTTGGGCTTCGGCTATTGTTGTCCATTGGACTAGGGCTTCCATTGTTCCTTGGGCTTGGGCTGCGCCCATTGGCAGCCACAGGGCTACGGTAGCCGTCAGATGGGCTCCTGCTGTTCTCCCTGCCCCAGGGGCTGTCACCATTGCGCTCATCATTATCCTTGGGTGGTGGGCTTACCCGATCCTGTGGACTCCTTGGACTCCGCCTACCATTCGGGCTGGGGTTGCGCTCCTTTCCATTTGCTGCTGGGGAGATGGATCGCCTGGGACTTCTGCTGTAGCTAAGACTCCTTGATCTCCTATCATCACGATCTCTGCGTCCCCTGGGAGATCCAGATAGGGATCTGGACCTAGATCGGCTGTAACTCCTGCTCCGGCTCCGGCTATAGCTACGACTACGACCATGACCACGTCCACGGCGTGGCGATGGGGAGCGCGAATAACTTCTCTCTCGCCTGAGATTTCTTGGACTGTTTTGGCAGTTTCTTTCTATGTGACCTCTTTCTCCACAACGGTAACATTTGTTCTTCCAGTCACCAGCCTTGCAGTCTCTTGCCCAGTGACCATCAATCCCACAGTTAAAACAGCGACCTGTTCCTGGAGGAGGTCCTCTCCCCATATATTCACGTGAACCACCAGCAGCACCACGTGGAACTCCTTTAGCAAACTCAACAAGAATGCGGCTTCCATCAACATCCCTGCCATCTAGGTTATACCGCGCTTCATCAGCATCACGGGGATCACTGAATTCAATAAACGCGTAGTCGCGCTTCAACTCCACTTCACGTATTCTGCACCAATGGTTGCCAAACAGTAAGCCATCATGACTCAAGTACTCAAATGCATCACCGACTTGCAACTTCCACTAAAACAGTCAATAACATTACACCAAGGGCACCCTTCACCAAAGTCCTCGACAAACTTTGGAAGAATGGTCACCAATTCCGGAGAAAAAAGAATGGCCACCAATTCCACCAAGGGCACCCCTTCCACCAGACCACCACAGACCTCCCGGGTTGTGTAAAAAACCGAAAAACCTTCCATATCTGCCGAAAAGATATTCTAGGTCACGAGAACGAGTGCGCGAAGACAGTCTACCAACATACAAGCGTGTGCTTCCATAATGATCATCATAGCGAGGCATCTCCAGAGATAGAGGATGCGGCGGAAGCAGCGGTACGCCGGCGCCGGCGCCGCTGCTCGCTGGATGGAGATCGCCGCAGGCGGCGGGCGGGTGAACTCGCGAGGAGACG

Explanation	CPC Score
noncoding	-1.26256

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0208000.2	3	9853616	A	G
Osa03LNT0208000.2	3	9853658	A	G
Osa03LNT0208000.2	3	9855646	G	T
Osa03LNT0208000.2	3	9855719	A	G
Osa03LNT0208000.2	3	9853238	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0208000.2	osa-miR167a-5p	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167b	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167c-5p	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167d-5p	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167e-5p	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167f	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167g	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167h-5p	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167i-5p	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR167j	Cleavage	5.0	17.674	1	21
Osa03LNT0208000.2	osa-miR5144-5p	Translation	4.0	14.197	1	21
Osa03LNT0208000.2	osa-miR5144-3p	Cleavage	3.5	22.335	1	21
Osa03LNT0208000.2	osa-miR164a	Translation	3.5	13.603	1	21
Osa03LNT0208000.2	osa-miR164b	Translation	3.5	13.603	1	21
Osa03LNT0208000.2	osa-miR164c	Translation	4.0	13.603	1	21
Osa03LNT0208000.2	osa-miR164d	Translation	3.5	13.603	1	21
Osa03LNT0208000.2	osa-miR164e	Translation	3.5	13.603	1	21
Osa03LNT0208000.2	osa-miR164f	Translation	3.5	13.603	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0208000.2	3	qBM-3	Physiological trait	Source activity	RG369	RG745
Osa03LNT0208000.2	3	qGY-3	Morphological trait	Seed	RG369	RG745
Osa03LNT0208000.2	3	S34(t)	Physiological trait	Sterility	nan	nan
Osa03LNT0208000.2	3	qGW3	Morphological trait	Seed	C706	C12534S
Osa03LNT0208000.2	3	qOE3-1	Physiological trait	Eating quality	nan	nan
Osa03LNT0208000.2	3	qTA3	Physiological trait	Eating quality	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus