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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0208100.1

ATGCCAACATATACACATCATCATCCGTGGATTCCTTTGTACAGTGCTTAATTTTTGCCAGATCTCAACGCATGCCTAATCTGACAGAGTGACAGCTTGGAGCCATCCAGTGTAGCGAACCACATCTCGCGTAGAATCCAATTTACTACGTGCAGCTCCCGACAGCTACAATCTCCTCTTTGAGCGTCTTCCTCTTGCCATCGTGCTTGCTCCCGGCCTTCGCAGGCTTCTTCAGCGTCTTCTTGAGAAGCAGGTCGGTCTGACGCTCCATCTCTCGGATCTGATCCAACGTCATGCCGTACCACTCGTCGATCCACGCGAAGCACAGCCGGTGGCACGCCAAGAACAGCGCCCTCTCCCCCGCGATGATGCAGTCTTCCAGGCGTTCACCCAAGCCCCAGATCGGAGCGTCCATGATCACCAGCTTGTACGTGGTCATGACGGGACGGCATGAATCCATCCAACCCTTCAAGAGAGGGCCTCGGCTCGTCCTCTGCGACCTGAAGGCTGTCAGGTCGACGTTTGGGGCGCTGATCACCTTGCTCCAGTAGTCCCTCGACTGCAACGCGATGTCGACGACCTCTACCTCTCTTGCAGCTAATTGTTCACTGGTTAAATTGTGGGCGTTCTCAGAGCAGCCATTGTCAGGTCTGATCACAGTGTCGATGGTCAGTGAACACTTGCTAAAAAGCGGGCACTTGATCACTGATGAGGGTCGGAGTAGAAATCATGGCCACATGAACACAGAGAAGGGGAATCCAAA

Coding Potentia
Explanation CPC Score
noncoding -1.209
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0208100.1 3 9905200 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0208100.1 osa-miR818f Cleavage 3.5 20.488 1 21
Osa03LNT0208100.1 osa-miR5518 Translation 4.5 15.543 1 21
Osa03LNT0208100.1 osa-miR2926 Cleavage 5.0 20.345 1 20
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0208100.1 3 qBM-3 Physiological trait Source activity RG369 RG745
Osa03LNT0208100.1 3 qGY-3 Morphological trait Seed RG369 RG745
Osa03LNT0208100.1 3 nan Morphological trait Seed RM7 RM251
Osa03LNT0208100.1 3 S34(t) Physiological trait Sterility nan nan
Osa03LNT0208100.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0208100.1 3 qTA3 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus