© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0211900.1
ACCTCGATGTTCCTCCGCCCTCACTAATAACCATGTTTGCAGACTTCTTGTCCTTGCGCTCAGGACAATCCTTGGCCCAATGCCCAGACTTGCCACACACAAAGCAATCTCTTTTTGCCTTTCCCTTACCTTTCTTCTTAAAATTGGTTGTAGCCTTGGGTTTGACGTCAGGTTTGACTTTCTTGTTGTTGTTGTGGGATGCGTGAGGGTTCTTCTTCTACACCAAATTGGCGCTAGAACCTCCCTCGATCTTTTTGCCCAAGTTATCCTTTGCCCTCGCCTTCTCCTCAACACCCAAAGAGCCAATGAGATCAGTAAGACCGAACTCTTGCCTCTTGTGTTTTAGAGAAGTAGCAAAGTCTGACCAAGAAGGTGGCAATTTGGCAATAATGCCACCCGCCATAAACTTGTCCGGCAACTCACAATTGTTGTTCTCAAGTTCCTTTGCCAACATTTGAATCTCATGAGCCTGTCTCCACAACAGAACGGTCATCGACCATCTTGTAGTCATAGAATTGCTCCATGACATACAGCTCGCTGCGGCGTCGGAAACTCCGAACTTGGCCTCAAGTGCATCCCACATGTCCTTCCCCGAAAGCATGTGCATGTACACATCCACTATATTGTCAGTGAGTACACTGATCAATGCTCCACGGAACAAGCAATCCGAAGCCTCTAACTTAGCCTTCTCCTCAGGAGAGAGAGGCGGTTCACTCGGTTTGCCCCGTGAGACAAAGAAACAATGCATCGTTGTCAACCACAAAAGTGTACATGGTTTCCATCTTTTATAATTTGAACCATCGAAAGCATGTGGTTTTAGTGATGCAACAAAGCCAACTACCGAAAAAGACCTAGACTGCAAAATAAAAACAAAAATAGCTATAAAATTAAGTTTTAAAATTTAAATTCGACTGACTGATAAGATGACGAGCAGTCAATGACAATTAATTTCACACAATATACTAAATTTAAAGAATTTCGCATAACTCCTGATTACGAAAATACCATTTAGGTTCAGGAGAGAAATTCAACCTTTTGTGCATAACAAGCTAGTATAGAAATTGCTGACCATGCATGAAACAAGTTAAGGGGAAAAAGTTGTGTTTTCACCCGCCTACTAACGACGGTAGGTTGATGGAAAGCTAACGGAAAGGACAAATAAAATATGAAAAGAATGAGAATGAGGAGCAAATTTCACGAGAGCAAATAAGGGAATCAATCAATTCCGAAGGGCATCTGGAAAGCTAACGAAGAAGTTTCTCCTTGGTTTTAAGTGGAAGTCTAGTGCATCTGAACAGGCTGGCAAAAATTTCAATTTCCTGCGGTAACTAAAACTATTTGACTAATCGCCGGGTACATCAAATTAATATGATTGCATTCTAGTGCAATCATATCATCTGAACAACAGATTTAATTAAATGCATGCTCGACTGCGATCTTTCAAATAGGGAAAAAGGCTAGGTTACTTTTATGGGAGCAGAGTTGCACATGGTGCAGCATGTATACTCAGCTTGATCCCAGCAGTACTTGTCCTTTTGCATCGTTTCGGGCCAAAACTACATGACAGGATCTGGCTAGCTATTATTCACCCCGTTCCATAATATAAGAAATTTTAATATTTTACTTATGTTGTTTGACTATTCGTCTTATTTAATTTTTTAAATTATTATTATTATT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0211900.1 | 3 | 12247139 | T | C |
| Osa03LNT0211900.1 | 3 | 12246616 | A | G |
| Osa03LNT0211900.1 | 3 | 12246820 | G | A |
| Osa03LNT0211900.1 | 3 | 12246860 | A | G |
| Osa03LNT0211900.1 | 3 | 12246933 | A | G |
| Osa03LNT0211900.1 | 3 | 12247010 | T | C |
| Osa03LNT0211900.1 | 3 | 12247435 | A | T |
| Osa03LNT0211900.1 | 3 | 12248148 | T | C |
| Osa03LNT0211900.1 | 3 | 12248196 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0211900.1 | osa-miR5529 | Cleavage | 3.5 | 13.372 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR5534b | Cleavage | 5.0 | 21.538 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR812s | Translation | 4.0 | 9.249 | 1 | 24 |
| Osa03LNT0211900.1 | osa-miR5801 | Cleavage | 5.0 | 16.867 | 1 | 24 |
| Osa03LNT0211900.1 | osa-miR394 | Cleavage | 5.0 | 17.205 | 1 | 20 |
| Osa03LNT0211900.1 | osa-miR166k-3p | Cleavage | 4.5 | 14.959 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR166l-3p | Cleavage | 4.5 | 14.959 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR169p | Translation | 4.5 | 21.057 | 1 | 22 |
| Osa03LNT0211900.1 | osa-miR818a | Cleavage | 3.5 | 9.635 | 1 | 22 |
| Osa03LNT0211900.1 | osa-miR818b | Cleavage | 3.5 | 9.635 | 1 | 22 |
| Osa03LNT0211900.1 | osa-miR818c | Cleavage | 3.5 | 9.635 | 1 | 22 |
| Osa03LNT0211900.1 | osa-miR818d | Cleavage | 3.5 | 9.635 | 1 | 22 |
| Osa03LNT0211900.1 | osa-miR818e | Cleavage | 3.5 | 9.635 | 1 | 22 |
| Osa03LNT0211900.1 | osa-miR1437a | Cleavage | 4.5 | 23.277 | 1 | 22 |
| Osa03LNT0211900.1 | osa-miR5490 | Cleavage | 4.0 | 18.043 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR5490 | Translation | 4.5 | 22.519 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR5504 | Cleavage | 4.5 | 13.249 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR5508 | Translation | 4.5 | 19.574 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR5799 | Translation | 2.5 | 9.249 | 1 | 24 |
| Osa03LNT0211900.1 | osa-miR1436 | Cleavage | 4.0 | 12.208 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR1439 | Cleavage | 3.0 | 12.066 | 1 | 21 |
| Osa03LNT0211900.1 | osa-miR2867-3p | Cleavage | 5.0 | 19.664 | 1 | 20 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0211900.1 | 3 | qLVG3 | Resistance or Tolerance | Cold tolerance | RM251 | RM282 |
| Osa03LNT0211900.1 | 3 | ccs3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0211900.1 | 3 | dcf3 | Physiological trait | Source activity | RM282 | RM251 |
| Osa03LNT0211900.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | RM7249 | RM3803 |
| Osa03LNT0211900.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0211900.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0211900.1 | 3 | qLEI3 | Resistance or Tolerance | Submergency tolerance | nan | nan |
| Osa03LNT0211900.1 | 3 | qGL3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0211900.1 | 3 | qOE3-1 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0211900.1 | 3 | qTA3 | Physiological trait | Eating quality | nan | nan |
| Osa03LNT0211900.1 | 3 | nan | Physiological trait | Eating quality | RZ574 | RZ284 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)