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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0212300.2

ATCCAACATGCCATATGTATTTCAAATAAAAGAAATACATTGTACAGATTACATAGCGATATGAGTTTCCTTGCAATTTGACCAAAAATGCGGTCCAAACTTACAGCATCTAGACTACAATCCTTGCATACTCCTAAGAGTGTACAGACTACATTGTATGGATTAACAGCGAAGGCTACATTCATCAAACTACAATCCTTTTAGCACCATCCACTTCTGCCTGCTGCATTTACCATCCTTTTAGGCAATCAATTTTCCTCTTTTGTATTTTGCACAAGGTTACAATAGTTCTCAGGATAACTTGACATCTGGCAAAACTAGTTCTCAGGATACAAGGTGTTCTGAATCTTTACAAACTCCTAATAGTGTATATACTACATAGTAGGAATTACAAAGAAAGGCTACATTCATTATCTTGTCATTAATTGTTCTATGCCACTTCTTCAGCATCCTCTCGTTCATGCTCTTCCAATCTTCAATTGCCATTCATGCCGCACCCCATATATCTCACCTGCAATTCTGCATTGGCCTCCGCAATAAAAACCAAAACCGAGCAATCAAACTATGAAACTCTCAATGCACGGGAGGGTGCCGCCTGGCCCTTCCATCGTTGCTGCCCTGCTCTAGGCATGGGAGGGTGCCGCCACTGCCCTGCTCCAGGCACGGGAGGGCGCCGCCACTGCCCTAGCTGTCCGAGGGAGCCGCCGCCGCATTCCGTCTCCACGCGCCCAATAGCGGATGAGAAAGGGGCG

Coding Potentia
Explanation CPC Score
noncoding -1.30546
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0212300.2 3 12366533 G A
Osa03LNT0212300.2 3 12366881 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa03LNT0212300.2 DTM_#DNAt_MULE_japo_Os3282 Chr3 - 12362493 12367707 1374
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0212300.2 osa-miR416 Cleavage 4.5 19.314 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0212300.2 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0212300.2 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0212300.2 3 qLEI3 Resistance or Tolerance Submergency tolerance nan nan
Osa03LNT0212300.2 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0212300.2 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0212300.2 3 qTA3 Physiological trait Eating quality nan nan
Osa03LNT0212300.2 3 ccs3 Physiological trait Source activity RM282 RM251
Osa03LNT0212300.2 3 nan Physiological trait Eating quality RZ574 RZ284
Osa03LNT0212300.2 3 dcf3 Physiological trait Source activity RM282 RM251
Osa03LNT0212300.2 3 qLEI3 Resistance or Tolerance Submergency tolerance RM7249 RM3803
Osa03LNT0212300.2 3 qLVG3 Resistance or Tolerance Cold tolerance RM251 RM282
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus