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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Sequence

>Osa03LNT0215900.1

ACTTTATTTTAAAATAGTGCATTATTTGAAAATAATAGTACAAAATAATGAATACACATGTTTAAGTGGAAACTATATTACATTATTAATTTAATGGTCACATATAATGGTTTAAATTTTATTTTCAAAAATTGTAGAGCTAATTTAGTTACCAGTGAGTTGTATGATGGTAGATTCTTTGTGTTGTAAATTTATGATTATTTAAAAAGGTATATATCCATATTATATAAATGGAAAAGAAGAAAAAAAAAGAAAAGAAAAGAAGGGTGTACATACATGGTACGTACGTATATATATACCCACGTACACATGCACGGGAGAAGGAGGAGAGGTGGGACCCCATAGTATTTGGTTTGTTTTAAGATTAATTTCATTTAACGGTGTATAATATTGGACCCACCAATTTAAGTGAAAATCAAGGGATAGATGTTTTGCTTTTTTCTTAGAATTTCTAGGATTTTCTCTAATTTATTAGAGTGCCACGTGGCAGCTTGAGAGCATTTGTAGGAAGTTTAATGGACTTTTATGATTATTTAAAAAGGTATATATCCATATTATATAAATGGAAAAAGAAGAAAAAAAGAAAAAAAAAAGAAAAGAAG

Coding Potentia
Explanation CPC Score
noncoding -1.03685
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0215900.1 3 14763218 A G
Osa03LNT0215900.1 3 14763015 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0215900.1 osa-miR2873c Cleavage 4.5 9.543 1 21
Osa03LNT0215900.1 osa-miR2100-5p Cleavage 5.0 19.109 1 22
Osa03LNT0215900.1 osa-miR398b Cleavage 5.0 18.315 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0215900.1 3 nan Physiological trait Eating quality RZ574 RZ284
Osa03LNT0215900.1 3 nan Morphological trait Root RM338 RZ284
Osa03LNT0215900.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0215900.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0215900.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0215900.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0215900.1 3 qDLR3 Resistance or Tolerance Other soil stress tolerance RM338 RM2453
Osa03LNT0215900.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0215900.1 3 qOE3-1 Physiological trait Eating quality nan nan
Osa03LNT0215900.1 3 qTA3 Physiological trait Eating quality nan nan
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus