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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0217500.1

CTCCCCTCCTCCTCCACTCCTCCTCCACTCCCGGGCCATCCCCTCTCCTCTCTCTCCCCTCCCCTCTCCGACGACTGCGGCCGGTGGGTGGCAGGCGACGGGTCGAGGGCTGCGGCGCCCTCCCCTCCGCGGGATGCGGCGGCCGGCAGCGGCGGGCCGTCGCGGAGGGCGGTGGCCGAGGCTGCGGGTGGAAGTGCGGCCAAGGCTGTGGAGGGCAGCGGGGCGTGACCATCGTGGAGGATTTTGTGTTGTAGATATCTGTATTGATTTTGTGATGATTTTGTGTTGTAAATTTGGGAATGATTTTTTAATGTTTGTGTGAATGATTTTGTGATGTAAATTTGTGGATGATTTTGTGATGTGAATGTGGATGATTTTGTTGTTGAATTTGTGGATGATTTTGTGAATGAGG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.997982
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0217500.1 3 16089452 C T
Osa03LNT0217500.1 3 16089500 G T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0217500.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0217500.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0217500.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0217500.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0217500.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0217500.1 3 qDLR3 Resistance or Tolerance Other soil stress tolerance RM338 RM2453
Osa03LNT0217500.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0217500.1 3 nan Morphological trait Shoot/Seedling RZ284 RZ403
Osa03LNT0217500.1 3 nan Morphological trait Panicle/flower RZ452 RZ284
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus