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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0218400.1

CGGGAGGTGGGTTGGTAAAAAACGAACTGAGGAAAGGTGGGGTGGTAAAAAAGGGAAAACCGGAAGGAGGGAGCGTTGTGCGGTGCTCGAACTAATATTCCACGCGCAACGCGCGGATTAGCACTACTGTAAATATTAAATTGTTTATATTTCTCTCCTATGCATCTGACTTAGAGCAAGTTTAATAGTATAGCCATCTATTAGCTCTAAATTATCTATAGTCAATTTAATAGTTAATACATACAATAGTTACTTATAAACATATACTACACAATTGATACCTGGTCCCACCACCTACCATACACACATTGCG

Coding Potentia
Explanation CPC Score
noncoding -1.51717
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0218400.1 3 16978020 A G
Osa03LNT0218400.1 3 16978070 T C
Osa03LNT0218400.1 3 16978077 T C
Osa03LNT0218400.1 3 16978110 T C
Osa03LNT0218400.1 3 16978245 A G
Osa03LNT0218400.1 3 16978280 A G
Osa03LNT0218400.1 3 16978295 T C
Osa03LNT0218400.1 3 16978293 G A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0218400.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0218400.1 3 qGL-3 Morphological trait Seed R19 C1677
Osa03LNT0218400.1 3 qLWR-3 Morphological trait Seed R19 C1677
Osa03LNT0218400.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0218400.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0218400.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0218400.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0218400.1 3 qDLR3 Resistance or Tolerance Other soil stress tolerance RM338 RM2453
Osa03LNT0218400.1 3 qGL3-1 Physiological trait Eating quality nan nan
Osa03LNT0218400.1 3 nan Morphological trait Shoot/Seedling RZ284 RZ403
Osa03LNT0218400.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0218400.1 3 nan Morphological trait Panicle/flower RZ403 RZ452
Osa03LNT0218400.1 3 An5(t) Morphological trait Panicle/flower C1677 R19
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus
Osa03LNT0218400.1 3 16978023 Grain-length(mm) 15.03518581 .
Osa03LNT0218400.1 3 16978040 Grain-length(mm) 13.61733627 .
Osa03LNT0218400.1 3 16978084 Grain-length(mm) 14.30542088 .
Osa03LNT0218400.1 3 16978102 Grain-length(mm) 12.0283432 .
Osa03LNT0218400.1 3 16978124 Grain-length(mm) 13.04931927 .
Osa03LNT0218400.1 3 16978231 Grain-length(mm) 13.01989365 .
Osa03LNT0218400.1 3 16978293 Grain-length(mm) 12.8220129 .