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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0221800.1

ATCCCTCCCTAATTTCTCGAAGTCTCGATGCGCCTGCTCATCTACCGCCGCCGCCCGCGTGTTCCCCTCTGCTTCTCTCATAGCAGCTAGCGCCGGCGGCGGCGGTGAGCGGCCGTGCCGTGCCGCGGATGTGTCGTCTGGACAGCAAGTCTGATTCTGATAGGTTCTTCTCCTGGGTTGGACTGATGGATTAGGATCAGTAAGATGCATATTGTAGTAAGATGCATATTGTGGATTGAGCTCAAGCCTCACTTTTTATCATGGTGGTTATGTATTTTCTGTGCAAAATATAAAGGAGGAAAATGCTCAGCCTGAAAGGACTTTAATTGCCATAAGAGGATGGTTTTCAAAGGACTGTAGTTTAATATGCAGGCTTTGTAATATGTACTATGTAATCTGCGAAATGTTAACAGTTTGCAAGGATTGTAGTTGAGATCATACAAGCTGCAATGTAATTGCAAGGAAATTTATCCGTTTGTAATATGTACAATTTTTGTAAATCTGAAATACACATGGCATGTTGGTGTTTTGAATTATACAAGGTGATGGACGCGTCAAC

Coding Potentia
Explanation CPC Score
noncoding -1.28585
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0221800.1 3 21056670 A G
Osa03LNT0221800.1 3 21055861 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
Osa03LNT0221800.1 DTM_#DNAt_MULE_japo_Os3238 Chr3 + 21055558 21060139 939
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0221800.1 osa-miR5543 Translation 5.0 18.647 1 21
Osa03LNT0221800.1 osa-miR5486 Cleavage 5.0 16.976 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0221800.1 3 qGL-3 Morphological trait Seed R19 C1677
Osa03LNT0221800.1 3 qLWR-3 Morphological trait Seed R19 C1677
Osa03LNT0221800.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0221800.1 3 qSV-3-1 Morphological trait Shoot/Seedling RM156 RM168
Osa03LNT0221800.1 3 ccf3b Physiological trait Source activity RM16 RM282
Osa03LNT0221800.1 3 ccfs3 Physiological trait Source activity RM16 RM282
Osa03LNT0221800.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0221800.1 3 nan Resistance or Tolerance Other stress resistance RM4512 RM8208
Osa03LNT0221800.1 3 nan Morphological trait Panicle/flower RZ403 RZ452
Osa03LNT0221800.1 3 nan Morphological trait Shoot/Seedling RZ284 RZ403
Osa03LNT0221800.1 3 nan Morphological trait Shoot/Seedling RZ452 RZ448
Osa03LNT0221800.1 3 An5(t) Morphological trait Panicle/flower C1677 R19
Osa03LNT0221800.1 3 sho2 Morphological trait Dwarf nan nan
Osa03LNT0221800.1 3 gw3.1 Morphological trait Seed RZ672 RZ474
Osa03LNT0221800.1 3 qGW-3 Morphological trait Seed G332 C80
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus