© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0222900.1
GGCTATAAAATGGAAGTAATGTTACATTAAGGATTTCATTGGTTTACATTCCAGTACATCTGACGAGTGCAAAAAGGAAAGGGAACACATCAAAAACTCTTGGCTGTGATACATCAAAATTGCTATTGCAGGAGTATAACACAGTAGAGCAATCCATTTCCCGATACAAGAGAAATAAAAAAACCATTGCCATGTTGGTGCTTTGTTGGGGAGATTGCAAAAACATTCTTCCAAGTAGCTTTCATGCAAGTGACGCTCCGTCTCCATATTGCTAACAAGGGAGTTCTGACCATCTACTTTTGTATTTCGGTGTGTCCACAAGCTAGAAGTTACAACAGGCAGTTAAAATGGAGCATGCAAAGGCCATTCGCTGTGTCTAAATCTCCAGTACCCAAGAAAGATGGTGAACTGAACAGCATGGGGAATATAATCAATATATTTACACACACTAAATATGGAGAAAATGTTACCGCCTCCTTTTTCTGCCCTTCCCTAGCTGTCCAGATTTAAAAGCATGTTCCTGCTCCTGAAGGAAAGCCATGGCTTTTCCATACTTTTCAGCTCTCTCTTGCTCTTGTTTTATCCTCTCCTTCTCTTTCACAGCAGACAGGAAATAATTATCTTTACGCAGTTCGCGCATTGCACCCTTCTTCTCACTCTTAAGGCGTTTCTTCATTTTCTTCATTTGTGCCCTTTCCCGATCAGGGTCATAATCAAGGCCTTTAATGTAATTCTCTTCAAATTTCGGATTCAACTGCCTGATTGGTTCAGGCTTCTGCTTTCGCATTTGGAGTGGCTGCCTTGATGCATGGACTTCATCACTTCTGTTTTTAATCAACTCAATGACTTCATGTAAAATGTATTGTAACAATCCAGGCAAGTCTGATTTATCCATAATTTCTTGCATCAAAGAAGAGATTGGCAGGAAAATTTCGGGGAACGAACATAGTTCTTCGTGTATAATAACAAATCCCCTTAAACATTCAGCCACAGATAGAAGTACACTAGCCTTGAAATTATCAGAGGAGAAATAAGGAGCATCAGAATCCATGCATATGACTTCCAGGATATTCGCTGGATTCACCTCGTGCACTTTTTCATGGATATGAAGCCATGGTTCCATTGTCTTGAGCTCCAAAAATTGATCATTGATCTTTTTTCGTAGGTCAGATCCCAGGTTTCCTCCCAGAGATGTTACCAAAAGAGATTGCAGAAAAACGACAGCTTCAGGGCAGAATTTCTTAGACTCTTTAGTAGCCACAAGCACCATGGAACACAAGAAAGAACCAACGGCTACATCTCGACCAGATTGTATGGGGCATCGCATCAAATATTCACACATAAGCAAAAGCATTGGAGTTGCTACCACATGGCGGAAGTCAGAGCAGGGAAATATAAGAGACCATAACCGCAGAAGAAGTAATGTTTTCAAACTTGGCCAGCAGCTCTTTCCTGAAACCTTTATATCTTCACATAGACGAGTACGTGTGTGGATAAGTCGCTGCCTCGCACAGATGGCAGCAAAATATGGAGTCTCCCCACTCATCTCAATTAAAGGCTTAACAAGGGTGTCAATTAGTTTGAATCTCACTGGACTCTGAGTAGCTAATACTGCAAAGTACTGCAGGAGAACACCATAGAAAACTTGCATCTTCTTTCTATTTTCAGCTGCAAGCCTTATTGAATTGCATGTACGAATTCGACTAATAATCTCAATTATTTCAGTTTCTGACCAACCATCTAGCAAGGAGCATAGATCTTTCAAGTTACTTGGTGCTTCTATCACAAAAGGAAGATTGTCATCCTTGACTTGCGATTCTGCATTAGACTCTTTCTTTGAATTTTGTAGATCTTTTTTCACCACTTTGCCACTGATCTTCTGTTCCTTTTGTTTGAGACCTTCCATTTCATCTTCTTCCACGGTAACCTCATCATCGTCACTTTGCTCCCAGTCTCTAGCAGACATATTACCAAAGTCATTATCACTTAAATCCTCTTCTTCATCTTCATCCTCAGCATCATCATCACCATCCTCAGCATCATCATCATCGTCATCACCATCATCATCAGATTCTTCATTGTCTGACCCTTCAGCATCTTCACCAATCTTTTTACCCTCTCTTTCATAAATTTCATCGACCCAGCCCTTTTCCTTTCTTGCTGGCTCATCAGTAGAAAAGGAATCACCAAGATCATCACCAGATATAGGTTTTGAGCTGTCTAGCTTCGTGCTGCGGTCACCCTCCTCGTCATCATCATCATCTTCATCAGAGGACTCAGCAGTTCCAAGCATTCGTTTCTGACGCTCTTTCTCCAACTTCTCAAGACGTTCTTTTTCCTCCTGAGCTATTTCTTCTGGTGTTTTTGTCCTGTCTGATGGACGAGCACGTTGATCCATAACCATTTCTTTCACTAATTTATCATATGCATCTGGTTTTTCCTTATTAAAAATCTCCTTGGCAGTCAAACCAAATGAATCTTTCTGGACTGTACTTGAATTATATTTATTTGCATCCATTCTAGCTGATCGAGTCAAGGACAACATCGCCTGTGTCTGGGCTAACATTGCAAAGTCACTATCCAACTTGTCTACAAGATGTTCATCCTCTTCCCTCTCCTTGGCCTTTTGGGCCTTGTAAAATTTGCTCTTTAAAATGATCTCTGACATAACTTCCTTCTTGCTCTTGTGAACATTAGTTCCTTCAGGAAGACCAATTTCTGAAGGAACATCACCACTTTGGAGAGGTATGCGGTTCTTCGAGAGGATCATGTGACCTTCTTCATCACTATAATCATCAAGAGGCACTTCTTCATCAAAATCATCTTTTCCCGAGAGAGAGTGAGGCAGGTGAACATCAACCTCATCTTCCTCATCATCAGATAGATTGTATTTGCTTTCTCGTTTCAGCTTTGCCATGTGCTCACGCTGCTGGCGGAGGATAACTTTGTCGAACTCGGGCAGCGTCTCGTCCCTCTCCCCGATCCGCCGGTCCTGGAACACGGACGACTTGGCGCTCTGCTCGAACTCCTTGAGCAGAGTGTTCTCCCTCTTGTGGATGGCCTCAGAGCGGGCGCGGCCGATGCGGCGCTCCTCCCCCTTGCGCTTCTTGCCCAGCACGTCGAACTTGCGGCGGGACCAGATGGCCTCGAAGGGGTTGTTGCTCCCCGACGCCGCCGCCGCCGCCATGGGCTTCGTCTTCGCCATTGCCGGGGGACGGGGGGAGGAGAGGAGCAGCGGGGAGGCTAGGGTTTTAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0222900.1 | 3 | 22288738 | A | T |
| Osa03LNT0222900.1 | 3 | 22286270 | A | G |
| Osa03LNT0222900.1 | 3 | 22286497 | A | G |
| Osa03LNT0222900.1 | 3 | 22286670 | G | T |
| Osa03LNT0222900.1 | 3 | 22286873 | A | T |
| Osa03LNT0222900.1 | 3 | 22286940 | C | A |
| Osa03LNT0222900.1 | 3 | 22287344 | A | G |
| Osa03LNT0222900.1 | 3 | 22288158 | C | T |
| Osa03LNT0222900.1 | 3 | 22288576 | A | G |
| Osa03LNT0222900.1 | 3 | 22288816 | C | G |
| Osa03LNT0222900.1 | 3 | 22288888 | C | T |
| Osa03LNT0222900.1 | 3 | 22289137 | G | A |
| Osa03LNT0222900.1 | 3 | 22289488 | T | C |
| Osa03LNT0222900.1 | 3 | 22286970 | T | C |
| Osa03LNT0222900.1 | 3 | 22290362 | A | T |
| Osa03LNT0222900.1 | 3 | 22290451 | T | C |
| Osa03LNT0222900.1 | 3 | 22291169 | G | A |
| Osa03LNT0222900.1 | 3 | 22291338 | G | A |
| Osa03LNT0222900.1 | 3 | 22291877 | A | T |
| Osa03LNT0222900.1 | 3 | 22292589 | A | G |
| Osa03LNT0222900.1 | 3 | 22290253 | A | G |
| Osa03LNT0222900.1 | 3 | 22286344 | A | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0222900.1 | osa-miR5532 | Cleavage | 4.0 | 1.714 | 1 | 22 |
| Osa03LNT0222900.1 | osa-miR5820 | Translation | 4.5 | 13.409 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR164e | Translation | 4.5 | 15.129 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR171g | Translation | 3.5 | 16.277 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR419 | Cleavage | 5.0 | 2.272 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR419 | Translation | 5.0 | 15.024 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR390-5p | Cleavage | 5.0 | 13.267 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR1426 | Cleavage | 5.0 | 8.415 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR1850.3 | Cleavage | 4.5 | 16.915 | 1 | 22 |
| Osa03LNT0222900.1 | osa-miR5144-5p | Cleavage | 4.5 | 17.737 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR5146 | Cleavage | 4.5 | 18.988 | 1 | 24 |
| Osa03LNT0222900.1 | osa-miR5160 | Cleavage | 4.5 | 15.663 | 1 | 22 |
| Osa03LNT0222900.1 | osa-miR5522 | Cleavage | 4.5 | 5.325 | 1 | 21 |
| Osa03LNT0222900.1 | osa-miR2275d | Cleavage | 3.5 | 14.853 | 1 | 22 |
| Osa03LNT0222900.1 | osa-miR440 | Translation | 4.5 | 12.539 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0222900.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0222900.1 | 3 | qGW-3 | Morphological trait | Seed | G332 | C80 |
| Osa03LNT0222900.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0222900.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0222900.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0222900.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0222900.1 | 3 | ccf3b | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0222900.1 | 3 | ccfs3 | Physiological trait | Source activity | RM16 | RM282 |
| Osa03LNT0222900.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0222900.1 | 3 | nan | Resistance or Tolerance | Other stress resistance | RM4512 | RM8208 |
| Osa03LNT0222900.1 | 3 | nan | Morphological trait | Panicle/flower | RZ403 | RZ452 |
| Osa03LNT0222900.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ284 | RZ403 |
| Osa03LNT0222900.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Osa03LNT0222900.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)