>Osa03LNT0225000.2

TAATTGTTTTACAGTTCTGAGCCTGATGCAACTGCTCAGCATGTATGGTTTACGGAAGCAGATCATATCCACGGCTATACAGAGGCCACACAGATAAACTTAACCAGGGAACATATATATATATACTCTAATAAGGCCTAGCAAAAGTGGATGTGTAAAATTCAATCAAATGAATTGAATATAGATAGCTACTGCACTGTGAAATGATACATGGCGCTGTACTTATATCTAGAAGTTAGCAAGGACATCTTTCATATCAGCAACCGACATGATGGGCTCATTTCCATAGATCCGCGTCACCATCTGAACGAAGCTCTCGTACTTGTCCAAAAACTCTTTCTTGCACTTGTCCCACAGTGAAGGAAACAACTCATCAGAAGTCAGTGTCTTCTGTAACCTCCTATACATGGCACCGATTGACTTGTCAATCCCAGATAAACTGGATTTGATCACCCTCCTTAGATCAGTTTTTGACAGCCCTAGCTGGAAAGGAATCTCTTCAGCAGCTATGGTGTATGTCAATTCATCGACTTTTCGAGAAAACTGAAACAGCCTCTCGAATTGAAGATAAATAAGTGAACTGATATGACGAGTGCAAGCTTGTTCATATGATTCACTGGCCTCATGGTAGAATTTTGCAAGAGTTGGCACAACATTAGCCAAGTCATAAAGACTGTTCTGGAAGGCAGCATAATTCTCTATCAATACAATGTCTGCAGTTTTGGGGTCACTATGTGCAATTTTGTCCAAAGTTGTGAACATTGTGCTGACTAGCTTTGTGTATGCTTTATCAATTAAATCTCTGGATTGCCCTTGAATATATTGCTCCATTCGTGATGCAAGGACAGCAAATCTGGGAATGTAGGCTAGTATTCCTGTCTGCCGTACATTTCTTTCATTGCGCTCGATTTGATGGCACGCTTCATCAATAAACCTGCTGAACTGTGTTGATATTCTTGACTCCAAGTCATGAAGTAGTCTGCGAACAAATCCTGCAGCATCAGCTTTCTGACCGGACAGGTATCGTTCTGTAATCCCATGCATTGAAATGCAACGCAAGGGATCAATCTTGTATGCCCAATCGACAACCGCATAGAAGTCTTCCTGGATTCCATCGAGTAGTTCTTGAAGAGCATCATTCAATGTACCCAATTCAGCAGATGTATCATCTGGTTTGAGATCATTGCCATCTGGATCCATAAGATTCAGGTCATCATCTGGGTCATTTCCCCCTGATCTACTTTTAGCATTCGGAGCACCAGCTGGAACAAGGGCAGGTACTTCAAAGCACATAAAATGTGCAAAAAAGGAACTCTCATCCACAAGAAGTGGGATAAATATTGTTAGCATCTTTGAATATGCATCAGATACTGTTGAAGTGTCAGCACTACTGCCATTCTGACCGCCACTATTAGAACCTTCAAGCCAAACAGCTGGATTTTTAGGTGCTTTCGTGCTTGCTCGAAGTTCATTGGCGAATTCACGTGCCTCTCGACGAAGCAATAAATTAAGAGAATGACAGTATGCTTTCCTTAAGGGGCCTAAACAGCTCTTGTCCAGACTCTTCAAGTGCTGCAGAAGTCGGGCATAAGTTCTGCATTTGTATCTTAGGTCTGCATGATCAGGCCGCTTCAATTGCCCTCGCTGAGAAAAGTAGCTTTTGTCACTTATCATGAAGTCCACCAAGCTAGAGAAGTAGTTCCTCAAAAATTCTGATGCGCGTCGAACAAAAGTTGTCTTCAGTTTCTCCAGTTCTGCTCTTTTTTCCCTAACAGCTCGCATGTTAACATAGCATGGATCCAGATTTGGCACTTCAAGGCTGCGAATGGCCCCTGTCAACCATTCACATGCCTCAACATTTTTCAGCATTCGTGACTCTTCAAACGAACCCCCAGTTAATGATGCTGCAAACTCCTGTGGAATTCGCAAGCGATCAAGCAACTTTTCTAGTTCTTCAACGAGTCCTTTGTTATTTACGGACTGCATCTCCAAGCCATTGTTGCGTGATTCAATCGATGCAATATCTTCTCTCATATGCCTGAGCTTCATATTAAAAATGCGTAACCACTCATCCATATCATCTACGGTTGCACTAGCAGCATCCAGACCCTGCAAAACCTCATCTATTAAAGGTTCACTCTGCAGTAGTTGATAGACATTGGCTGCTTCCAAAGCAACAAGTTCCTGTTTCAATCTCTCAGAGAAAGCATCTGCTTCACCTATGCCCATGACATATGTGTCAAGAAGTGCCTCCATGTCTTCCTCTTCATCCTTTGCTTGGGACACAAGATCATTTTCAACAGTTACAGTTACTTTCCTCTCAGTTTGAGTTGTGACAGATTTTTCTTGTCCATCTTGGGTGCTCGATTGGTTGTCCAGAGTCACTGTATTTTCCTTGGCCCAGAGGGCTAGCTCCACAAAATCAATTCCAACGACTTTTGGAAGATAGCTAAGTATCTCTTTGCACATGGTCAGGATAGAAAAAAGTAGGCGGTTTCTGTCATCAATGTTGCGCATTGTCCATTGTGGAGGGGCAACACTCTGACTTCTAAGGTTATCAAACCCCAATACAAACGTGCAACCACTAGGATCATTCGAAATAACCTCAACCTTTGTGAGATGTTTCAACTTGTAAAGCTTGGCTGGCTCAAGTACTGCGCCGGATGAATACTTCAATACTCGGAGAAAAGCTTTGGCTGCCTCACCTTTTGTCGATTGTTTAACGGTGAGCGCGAGGACGCGGGGCTTGGCGAGGCGGCCGAGCTTCTCGAAGATGCCCCTCCCCTTGGCGACGCGGATGGAGAAGGACACCTCCTCGCCGCGCGCCCCCGAAGCCGCCACGGCCTGCGCGCACGCGCGCCGCAGCTCGGCGTCGTCCGCGCTCGACTTCGCCAT

Explanation	CPC Score
noncoding	-1.30683

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0225000.2	3	23798446	C	T
Osa03LNT0225000.2	3	23798614	A	G
Osa03LNT0225000.2	3	23799009	G	A
Osa03LNT0225000.2	3	23799540	T	A
Osa03LNT0225000.2	3	23800367	T	A
Osa03LNT0225000.2	3	23801725	A	G
Osa03LNT0225000.2	3	23801794	G	A
Osa03LNT0225000.2	3	23802577	A	G
Osa03LNT0225000.2	3	23803124	A	G
Osa03LNT0225000.2	3	23804050	A	C
Osa03LNT0225000.2	3	23804490	G	A
Osa03LNT0225000.2	3	23805285	T	C
Osa03LNT0225000.2	3	23805897	T	C
Osa03LNT0225000.2	3	23806753	T	G
Osa03LNT0225000.2	3	23805810	T	C
Osa03LNT0225000.2	3	23806908	T	A
Osa03LNT0225000.2	3	23807921	T	C

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0225000.2	osa-miR5527	Cleavage	4.5	20.366	1	21
Osa03LNT0225000.2	osa-miR5532	Translation	4.0	12.828	1	22
Osa03LNT0225000.2	osa-miR5820	Cleavage	4.5	24.197	1	21
Osa03LNT0225000.2	osa-miR5827	Cleavage	4.5	13.672	1	21
Osa03LNT0225000.2	osa-miR160f-3p	Translation	3.5	12.091	1	21
Osa03LNT0225000.2	osa-miR171c-5p	Cleavage	4.5	16.655	1	21
Osa03LNT0225000.2	osa-miR171c-5p	Translation	5.0	13.465	1	21
Osa03LNT0225000.2	osa-miR1852	Cleavage	4.0	19.395	1	21
Osa03LNT0225000.2	osa-miR1861b	Cleavage	5.0	17.807	1	22
Osa03LNT0225000.2	osa-miR1861f	Cleavage	5.0	17.807	1	22
Osa03LNT0225000.2	osa-miR1861i	Cleavage	5.0	17.807	1	22
Osa03LNT0225000.2	osa-miR1861l	Cleavage	5.0	17.807	1	22
Osa03LNT0225000.2	osa-miR1865-5p	Cleavage	5.0	12.699	1	24
Osa03LNT0225000.2	osa-miR2864.1	Translation	4.5	24.259	1	21
Osa03LNT0225000.2	osa-miR2907a	Translation	4.5	16.551	1	22
Osa03LNT0225000.2	osa-miR2907b	Translation	4.5	16.551	1	22
Osa03LNT0225000.2	osa-miR2907c	Translation	4.5	16.551	1	22
Osa03LNT0225000.2	osa-miR2907d	Translation	4.5	16.551	1	22
Osa03LNT0225000.2	osa-miR812o-5p	Translation	5.0	22.222	1	21
Osa03LNT0225000.2	osa-miR5494	Translation	5.0	14.316	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0225000.2	3	ccf3b	Physiological trait	Source activity	RM16	RM282
Osa03LNT0225000.2	3	ccfs3	Physiological trait	Source activity	RM16	RM282
Osa03LNT0225000.2	3	An5(t)	Morphological trait	Panicle/flower	C1677	R19
Osa03LNT0225000.2	3	nan	Morphological trait	Shoot/Seedling	RZ284	RZ403
Osa03LNT0225000.2	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0225000.2	3	nan	Morphological trait	Panicle/flower	RZ403	RZ452
Osa03LNT0225000.2	3	qGL-3	Morphological trait	Seed	R19	C1677
Osa03LNT0225000.2	3	nan	Resistance or Tolerance	Insect resistance	G332	R19
Osa03LNT0225000.2	3	gw3.1	Morphological trait	Seed	RZ672	RZ474
Osa03LNT0225000.2	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0225000.2	3	qLWR-3	Morphological trait	Seed	R19	C1677
Osa03LNT0225000.2	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus