© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0225300.1
GTGCAAAAATCCACATAAAAGGTTCTTCAAATAATTAATTATAACCCGTCTTTCTTACAGAAAAAAGAAAAACATTGTCATGTTCTCTTTACACATATCATGGAACATGATAAGAAATAAAGTTGACCTTAATTTTACAAGCTAAGAAATAAAATTTATAACAGATGGTTATTGTCCATATGGTTTCAGAAAAAAAGAAACTGTCAATGACTACCATTTACAATCCTTACATGTCCACTTATTTACCTAAGAAACCATGAACAGCAGATGACTTGCTACAGTTCTGAAACTGAAAAGCTTAGCCTTCCATTTTGCCTTAAAAAAGAAGCGGCATGAAGGCGAGTTAGTCATCAATGGCATTTGCTTTCATGCAACCACATGGGGAACATCGCTGTTGCTTCCGACTGTCCCGCCTTCTACCATAGAGAAAATCTACCAGCTGCACTTTCGATCGCCGGTGCATGGTTTTTGATGTTCTTGTGCTAGTCTGCTCCTCGTATTTCAGCAGAGCTTCCTGCACCTTCTGCATTTCCACCTCAAGCCTCCCAATCTTCTCCGCCATCTTCCTCGCACGCTCCATGATCTTGCGCTGGTGTCTGCTCCTCAAGTCAATGTTGTCCCCATCAAGACCATCTTCAGATGTGAACTCCTCAGCCTTCTTGGACAGTTTACCGTTGCTATCGATCAGCTGAGTGATGAAGCCCTCAGCTTCTCTTATTTGGTACCTAACGCTCTCGAGCTCGAGCCCTTCTGATGCCTCTGTGTTTGTTTTGAGCTCCTGAATACTGGATTGGAGGGCATTGAGCCTTTGTGCATCAGAAGCCAATCTTTCGATTACCTTGTTCTTCCACTCTTGGTGCGGCTCCGTGGTGATTGACCTTGGTAACTCTTGCTTGTCAATGCTGAGTTCTTTCACGACCATCAGTTCAGAGGGAGGCCTTTTGTAATTGTCCCTCTCAAACGACTCACTTTGCGGCGGTCTCAAATCATTGCGTACATGGCTACTGCTAGCTCCAACGATGCCATGAGAGTCAAGCATCTTCTCATTTGCCTGTGCTACAGTTTTATTGGCCTGACCAAGGGAACCGGTTTTATTACCAGAAGAAATTTGGATGAGGTCAAGCTGAATGTCTTTCAGCATTTGCTCATAATTCATTTCAATCAAGTCATCATCCAAAATCTCCTTCAGCTTCAGCACCTCAATCTGCTTCCTCGCTTCTTGCAGATTGGCATTGAAATCAAGCCTCTCTTGATCAAGAAGGACGGCTGTATCCGTAACCACCTTCTGGAGTGCTTTGATGGTCCCATGCAATTTCTGCAGCTCCATGTCTTTTACTGTCCGTACTGTATTCTGATCACCACTCGATCTCATATTGGTCTTCAAAACCTGAGTTGATAATGCATTTTCCTCCATCCTGAGCTTATTTGATTGCAAACAATCATTGGCAAGGGATAAGGTTTGTTTCTCTAGGGCACTGACTTCATTCTGCAATGACCCCAACACTGTAAAATCTCCATTCAAATCAACTTTCAGCCTTCTGTTCTCAATCTCAACAGCATTCAGCTTGTCCTTCAGCTCATCTACATATGAGTTCCTACGGGTGATCTCTTCCTTGAGCACCTCCTTCTGTACCATACTGCTTATCTCAAAACTTTCACATGTTATTATGAGCTCAAGGACCTTCTCCTTGAATAGAGCCGCATTCACGATGGCCATTTGCATGTTAGCCAGCAATCTTTTGATGTCTTCATCACAAGATTTGATGTCAATTGCAGAGTTCTCCTTGCTTGTAAGAACTTCCATTTCACTCTGCATTTTATGTACTTCCTCTTGTAGCATTTCATTTGATTTCTCAAGGCCAGCCATGTCAACCTCTATCTCACCCGTTTCCATGTTTACATGGTACTCCAGTTGGCTCCTTCCAGAATTCAGGTGATCGGTGTCCCTTCCCACTGGATATCCACTTCCTATAGCATTTTCTGTACTAGTCGAATTACAAATACTGATGGTTCTACTGAGTTCTTTGTTGCACTCATTACTTTCTTTTTCTAAATCCCCAAGCTTCATGTTCATCATTTTGATGTCCTGATAAAGCTCACTGCCTGCTGCTTGCAGTTGTGCAAAATCACTATGCAAAGACACCAATTGCAATGTCCTCTCTTCATGAAGGCTTCTAAAGACCACAGAAAGGATATCTTTGCTCATTACCTCACTGATCAGAATGCTAAAATCATCTTCGAAAACCCTCTCTTTCTCTCTGGAATCACATAGTTCATCGGATAGCATTGAGTTTTCTTGAATAAGCTTGATAATCTCACTTTGCAATGACCTCCGAGACCCTTGCAGTTCTGACAACTGTCCGACCAAGAACTTTGCTTCTGCCCTTAGCTCATCCACTTTGCGATTACGAGTCTCCACTTCTTCCCAGAACTCATCAGTGATATTCACAAGTTCTTGTTTTTCTCTCTGAAGCTGGAGCAATTCCTCGCTCTTTGCTTGCTGCTCTTGCTTCAGGGTGTTTCGCTCTGACCTTAGATCAGCCACCTCTTGTCCAAAGTGTTCCAAGAGTGTGACAACGAGTGACTTCTCAACAAGTTCATTCTGTTTCACATCCTGAGCATCAGATATAGTGTTCAGTAGGCAGTTGATCTCATGCAAGATGAGATGCACAATGCTATCAAGCTTCATTTGGTCTAAGGATTCATACTTCTCCTCCAAATGCAAGACTTTCAACACCGAACCAATACATTTAGTTAGCTTCTGATTATTCTCCGATAAGTACTCCATTTTCTCCTCCAGAACCTGACATACTTCTTGCTTCATTTTTAGTTGTGCTAAGAAGTCTGAATTTGCATCTGCAATGTCTTCCAAACACTGCTTCCAGATGAAGATTTCTGTCTGAGCTTTTACAATGTTTTGTTCCTCCTCTTCAAGCTGTTCCTCTCTATTCCAACCTTCTTGCGACAGTACGTTGATTTTCTCGTGTAGAGCATCCAATTGAGACTTTCTAGAGTGCTCAAGATCATTGTGCTCCTTCCTCTCAAATCTTATCTGTTCCTGTAACTTGATCACCTCGTCAAGCACTGAGCCTTTCTCTTCTTGTAGATCAGAGTGCCGCTTTTCTAGCTCTGCATAATGTGCTTCCAAATTCTGCAGGGTATCACTGATTCTATCAACCTGACAAGCAAGAGTACTCTTCTCATGTTGAAGTGCAGAATTCTGACTATACAATGCCTCTGAAGATTCTTCTAGCTCTTTTAATTTCCCTCTTAAGCTTTCGAGTTCAGCATTAGCATCAGATAATGAATTCTCTAGAAAGACATTCTTCTCAAATAGCTCTGCCATAGTCTGAGAAATTGCCTCGATTTGTGCAACAAGCACAGCTCGCTCAGACTGATGACTGGAAATCTTGGAGCTAAGGTGCTTGCATGATTCTTCCAGTTCTGCCTTCTTTTCCCTCAAAACTTCGAGTTCAGTAGTCACAGCTGACAAAGACTTCTCCAAATATGAGTTCTTCTCTGACATCCTCTCCAAACGCCTTAGGTTCTCGATATGCAGAACTTCTGTGCTCTCATGGTTTCTTATAATCCCTTTCAACTCAACATTACCATCCTTCAATTCTTGTACGAGTGCTTGTAGTGATTCTACATTCAAGTCCACAGCCTGTATTTGCTCCTTGATTGAAGAGTGTTTCTTGTCCAAGTCACTCCTATCCTCCTTAAGGTGACAAAGCTCATTTTGAAGTGTCTTCTTTTCATCAACATGCCGGCAAACATCTTCCTCGAGTCTCCGCTGTGCATTCTTCATCGTAATTATCTCGTCCTGCAGGCGAATTATCATGGACGAGGAAGAGTGAATTTGATCATTCAAACTTGTGCTCTCTTTTTGAATTTTCTCCAATTCTTTCTCAAGCATAACCTTTTCTGTTTCAGTGTCCTTTGCCTTGCTTACTTCAATCTGCTTCTCAAGAGCCAAAAGCCTCATTTTGTCCTGAGCAAGTATTAGTTGCTTCTCCAAAGAGAGCTGAGCCATTTCTGCTTGCATGCACTTGAGATGCTCCTCCTCTGTAGAGATGTTAAGCTTTTCCAACTCAGCTTGCTTCTCGTTTAGCTCTTCATGCTTCTGTTTCAACATATGTTTCAGCTTATTCAGCTCCAAATTCATCTCCTGGTTTGCTTTTTCAAGAAGTACGGAACGTTCGTCAGCTGTGGTAAAAGGTTGAAATCCACTTTGCATTTCCTCTTTCAGTCTGTTGAACTTCTCCTGTGTATGCAATATTTCGGACTTGAGGTTCTGTAATCTAGCAGTCGATTGTTGGCATTGCAAAACTATGGCTTCTTTCTCTGTATTTTGTTGTGCAAGTGCCTCCTTGAGGCAAACAACCTCCAACTCAGCCTTGTTAGTCTGCTCTAACAATGATGAAATTCTACTCTTCAGGTCTTTGTTTTCCTCTGATAAACTTTCTAGTTCCTTCTGCAGCCTCTCGTTATCCTGGTTGTCTTTAGCTTGCTTTTTTGAATCACTAGCATTGATGAAAGAAAGGAAATATGGAGCCATGTCTGGATTGTCCATCTCAGTTTCGATAGAAGCAGTTTCAGCTGGGAGATCATCATCCAAGTCCACCAGAACCTGCTCAGGAAATACTTCTGCTATCTTACGATGGGCCTGTCGGAGTTCGCCAGCTGCATGATCATATCTTTCTGCTAAAGCTCGGTATGCACGGTACAACTCCTCAAGCAAGGCCATCAGCTCAGGACGCCTTCGGTAGTACATTTCTGCTCTTTTTGCAAATGATTCAGCATCTTCTTCAATGATCTTGATCATCATCTTGATTTTGCTATCCATGTCTGTCAGATTTTCTTGAAGCCATTTTGAATTCTTCGGGCAGATATGACTGTTCCACCACCATGAATATTTGCGCCTCATATTGGTTGGTGATGTTTCTTCCATTATGCCAACAAGCTAAAGAGCAGAGCTACTTTCACACTTTAAAGAAACTTCGATCCTTTACAAACCACAGACGGAGGAACATGAGTTACAACAAGTACTCACGATCTATCACAGTCAATTACCTCTTTTCCCTCTGCATCTGCAGCTGCAACCCGATGGAGATCCAGCTGCTCCCCATCCCACCCCTAGGCCATCTCCCAAGATTGAACCGCGGTTGCCGCGATATGTATCCGTGAATGTATCAGCACCAAGATTATTCTTCTCCTCAGAGCAGAGCTGCAACAACCATGCGAGGAAGAAAGAGAGCAGCAACAGCAGCAGCAGAGTGGGAATCAATCACCGAATCAGATCAGTGAGAGAGAGAGAAAGGGGGGAGCGGCGGTGATGGTCTGATGGATCGGGATTTAATTGTCCGTTTCTTTCTCGTGTAGTAAACTTGAAAACCCAGAGGAGGAAAGGACGGATTTTGCGGCACGAACTAGTTCAATGCGATCCCGGACGGAACAAGGAGGAAAAAAAAGAGAGAGAGAGGAAAAATTCCTCCTTTTTTTTTGTACGAACCGAATTCCTGGCTGGATGGATTGGTTGGTAGAGCGAAGCTGAAGCAGTGTTCTTGTCTCTGACTGCTGCTGCGAGTGATGAGTTGTGAGAGTGGGGACTCA
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0225300.1 | 3 | 24429275 | A | C |
| Osa03LNT0225300.1 | 3 | 24427596 | A | G |
| Osa03LNT0225300.1 | 3 | 24427874 | T | C |
| Osa03LNT0225300.1 | 3 | 24427993 | T | C |
| Osa03LNT0225300.1 | 3 | 24428066 | C | T |
| Osa03LNT0225300.1 | 3 | 24429479 | G | A |
| Osa03LNT0225300.1 | 3 | 24430940 | A | G |
| Osa03LNT0225300.1 | 3 | 24430981 | A | G |
| Osa03LNT0225300.1 | 3 | 24432810 | T | G |
| Osa03LNT0225300.1 | 3 | 24432951 | T | G |
| Osa03LNT0225300.1 | 3 | 24435341 | A | G |
| Osa03LNT0225300.1 | 3 | 24435830 | G | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0225300.1 | osa-miR5791 | Translation | 5.0 | 8.795 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR5794 | Cleavage | 4.0 | 18.663 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR5837.1 | Translation | 4.0 | 22.679 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR6255 | Cleavage | 5.0 | 21.876 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR395f | Cleavage | 5.0 | 6.96 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR396a-3p | Cleavage | 4.0 | 15.156 | 1 | 20 |
| Osa03LNT0225300.1 | osa-miR396b-3p | Cleavage | 4.0 | 15.156 | 1 | 20 |
| Osa03LNT0225300.1 | osa-miR396c-3p | Cleavage | 4.0 | 15.156 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR159f | Cleavage | 4.5 | 17.695 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR160f-3p | Cleavage | 5.0 | 15.156 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR814a | Cleavage | 4.0 | 15.646 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR814b | Cleavage | 4.0 | 15.646 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR814c | Cleavage | 4.0 | 15.646 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR1426 | Cleavage | 3.5 | 13.683 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR1436 | Translation | 4.5 | 11.15 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR1438 | Cleavage | 4.0 | 9.327 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR1438 | Cleavage | 5.0 | 15.903 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR1851 | Translation | 4.5 | 14.575 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR1320-3p | Translation | 4.0 | 15.897 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR5148a | Translation | 4.0 | 12.889 | 1 | 24 |
| Osa03LNT0225300.1 | osa-miR5148b | Translation | 4.0 | 12.889 | 1 | 24 |
| Osa03LNT0225300.1 | osa-miR5148c | Translation | 4.0 | 12.889 | 1 | 24 |
| Osa03LNT0225300.1 | osa-miR5491 | Cleavage | 4.5 | 6.198 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR5491 | Cleavage | 4.5 | 14.491 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR5500 | Cleavage | 4.0 | 13.065 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR5502 | Translation | 5.0 | 14.403 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR5505 | Cleavage | 4.5 | 14.232 | 1 | 22 |
| Osa03LNT0225300.1 | osa-miR5508 | Cleavage | 4.5 | 18.053 | 1 | 21 |
| Osa03LNT0225300.1 | osa-miR2275c | Cleavage | 3.5 | 12.798 | 1 | 23 |
| Osa03LNT0225300.1 | osa-miR5148a | Cleavage | 5.0 | 14.09 | 1 | 24 |
| Osa03LNT0225300.1 | osa-miR5148b | Cleavage | 5.0 | 14.09 | 1 | 24 |
| Osa03LNT0225300.1 | osa-miR5148c | Cleavage | 5.0 | 14.09 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0225300.1 | 3 | gw3a | Morphological trait | Seed | R19 | RZ403 |
| Osa03LNT0225300.1 | 3 | nan | Morphological trait | Panicle/flower | RZ448 | RZ403 |
| Osa03LNT0225300.1 | 3 | nan | Physiological trait | Eating quality | RZ403 | R19 |
| Osa03LNT0225300.1 | 3 | An5(t) | Morphological trait | Panicle/flower | C1677 | R19 |
| Osa03LNT0225300.1 | 3 | nan | Resistance or Tolerance | Blast resistance | RM16 | RM168 |
| Osa03LNT0225300.1 | 3 | gw3.1 | Morphological trait | Seed | RZ672 | RZ474 |
| Osa03LNT0225300.1 | 3 | nan | Resistance or Tolerance | Insect resistance | G332 | R19 |
| Osa03LNT0225300.1 | 3 | qGL-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0225300.1 | 3 | qLWR-3 | Morphological trait | Seed | R19 | C1677 |
| Osa03LNT0225300.1 | 3 | n-p3 | Resistance or Tolerance | Other soil stress tolerance | RZ403 | R19 |
| Osa03LNT0225300.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0225300.1 | 3 | qSV-3-1 | Morphological trait | Shoot/Seedling | RM156 | RM168 |
| Osa03LNT0225300.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ403 | RZ630 |
| Osa03LNT0225300.1 | 3 | Yd3-13 | Morphological trait | Seed | RZ403 | CDO337 |
| Osa03LNT0225300.1 | 3 | nan | Morphological trait | Shoot/Seedling | RZ452 | RZ448 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)