>Osa03LNT0226100.1

AAGATTTTTACGAATACGCTTTTTTTTACATCGAAGTACGTTTTTTTGGAACTGCCATTCAAAAAGGAAATTACTTTTTTCTAGTTGTATGTGAAAGACATCTATTGCCGCAAATCAATCCATCTTTCTTCTTTTTCTTAGTATTTATACTTAGATACTAAAAGATATTGAAATTCTAAATTCTTTTTTTACTTCATTTTGTCTAATGCGGATAAGACAAGAGTTTTTTAACATATTATATATTTTTT

Explanation	CPC Score
noncoding	-1.13993

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts
Osa03LNT0226100.1	DTM_#DNAt_MULE_japo_Os3383	Chr3	.	25245650	25250916	247

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0226100.1	osa-miR7693-3p	Cleavage	5.0	10.032	1	22
Osa03LNT0226100.1	osa-miR5492	Translation	3.5	12.746	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0226100.1	3	An5(t)	Morphological trait	Panicle/flower	C1677	R19
Osa03LNT0226100.1	3	nan	Resistance or Tolerance	Blast resistance	RM16	RM168
Osa03LNT0226100.1	3	gw3.1	Morphological trait	Seed	RZ672	RZ474
Osa03LNT0226100.1	3	nan	Resistance or Tolerance	Insect resistance	G332	R19
Osa03LNT0226100.1	3	qGL-3	Morphological trait	Seed	R19	C1677
Osa03LNT0226100.1	3	qLWR-3	Morphological trait	Seed	R19	C1677
Osa03LNT0226100.1	3	n-p3	Resistance or Tolerance	Other soil stress tolerance	RZ403	R19
Osa03LNT0226100.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0226100.1	3	qSV-3-1	Morphological trait	Shoot/Seedling	RM156	RM168
Osa03LNT0226100.1	3	Yd3-13	Morphological trait	Seed	RZ403	CDO337
Osa03LNT0226100.1	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630
Osa03LNT0226100.1	3	nan	Morphological trait	Shoot/Seedling	RZ452	RZ448
Osa03LNT0226100.1	3	gw3a	Morphological trait	Seed	R19	RZ403
Osa03LNT0226100.1	3	nan	Physiological trait	Eating quality	RZ403	R19
Osa03LNT0226100.1	3	nan	Morphological trait	Panicle/flower	RZ448	RZ403

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus