>Osa03LNT0233700.2

AAACCAAACTGGCGCCTAGTATTGTCTGCAAATTAACTCTTTAAAAAGAAGGGTAAACACTAACGTCGATATGTGCAAAGCCAACCAAGTTTCGTCACCAGAAGCTTTAACGGTAAAGAAAGCTTTTATTCCTAAAAGTTGGGAAGTTCTAAAGGAACTTTTGCTCAAAGGGTATGAAACAGAAAATGAAACCTTCACCATTTTACTCTAATTACAAGGGCTAAGCAGGCATTCCCGCTTTTGTTCTGCAGCCTCCCCTCTGCAGATCGGCATGGTCTAGCTATGAGTTTTCTCTGTCCCTATGAGTTAGGCAATGGTATTGTGCCCTCAGCATAAACAAAAGTTTCTTCCTCCCGATGAAAGAAGGTTCTTGAGCAGGAGGTATCAAGAAATGTTTCCCCTAACAGTTTGGGACGAAGATGGGATAGCTGGCTTCTTCTCTATTTGGTCATAATGAAGAACAAAATTGTCCTTGCGGATTGTCTCCCAGTTGTTTGGATCAAAGCAACCGTAAGACCCTCGTTCATAATGAGGAGTTTTGACCAGAGGCTCAACATTTGGAATTCTTGTGAGCCACACTCGCACTTCTTTATGATAAAACCATCCTCGGTTGTAAAGCTCACTAGCAGCACATAGCTGAGCTTCATCCCTTGGCATGCTATAGAAGATGTAAAACAGCGTTAACGTCTGGAACTTCTGAAAATGTATAGGTTGTAGCGGTGGAGGTTGCTCAGCATTGTAGCAAGCTGGAATATGAAACTCAGGTTCTCCTTTTGCTGGCTCATTTGACCATGGAGAACCAAATGTCTTGTATAGATTGTCTGGTGAGTTCAAGTTTAAACCCAATGTTGTCAAATCCATTCCTAAAGCAAGAGATGCTAAGTCAGCATCATTCATCCTGATAACTCCCAGCAATCCCATCAAACCATAAGGATCAGGTGGTGTTTGCCCTCCCTGGATGGACTTTAGACTTTGATCTCTGTATGACTGTGTAGCTGAAGACACCTGCTGCAATCTGAAAGGATTTTGAGTTTGAGGCTGCTGGTATTGTTGGATAAGTTGCTCGTATGATCCCAAACTAGAAGTTTGACTTGCAGAAGATCTTAATCCGATATTTTGGGGACCAGCATTCTGAACTGAATTAGCACCTTGCTGGTGTTGCTGACGATTTGGTGGGTAGTTACTTCCTAAATTAAAGCCAACTGACCTTGACATCGGATATTGCTGTGCTTGCATAACAGGCACATTATCATGAAGTTGTTCCTTGTGATGCAACTCCATAGCATAATCTGAAGTGCTACCTTTGTATCCAGGTAAAGCTGGGAAGTCTTCATTTTGAATGCTAAATTCCTGGTTTTGTTGAACAATGGTGTTAACACCAACTCCTTGCTTCCGCAGTGAGCCATATTGTCCTTGCGGACCACCAGCAGAACTAGGTCGACCAGTCAATTGGGGAAAATCATTCATGTCATATGGAGCACTGTCATTGGCATCATGCAGCATCCCCATGGAACCAAGGGAATTATTTCCTCCTTGTATTTGGTTCTGAGATAATGAACCTCCAGACGTCGGATATGAACTCCCCATCATGTTCATCATTTGAGGCGATCCTATCATTTGGGTATTTCCGAGGACTTGTTTCATATGCCCAACTCTGATGTCAAGAAAAAGAGGGCTAAGTTTGCAGCTAAAAGCAAACAATATAGTAAGTAGATATACTCAACAAAAAATCAGCATTGCGATGGAAGAGCATTTCTTAACAAACAATAGTTGACGATAAAAATAACAAGAATAGAGAAACAAGTATGCAGCCATGAAAGCATGACCACATAAAGAGTATTAAACTCTACGGAGTACTCCCTCCATTCCAAAATGTAGCGATTTCTGGCTACGAATCTGGACCGGGTCCTTGCTGAAGAATGCCATTCATCATCCTGCTGGATCCTTGGACATTTAGACCGCCACTGCCAATATTGCCACTCAAATTCATGCGTGATGCTATGCTTGGCACAGATAATCCACCAGAGCTTATATTCCTTCCAATGTTACTTCCACCCACAATATTTCCTACAGAACCAGTGATCCTAGGGCCCAAATTTCCCAAAGCTGGAGATACTGACATCCCAGGAACAGAATTCCGATTACCACCAGCACCCAAGTTTGAGGATAAGCCTTGAATGGTACCTCCAATATTCAAGCTACTACTAAATGCTGGACCTCCGCCAACATTCACTCTAGAACTGACTCCTGAATGCCCATGAGGAAGCTGAGACATTCCAACTGGAAGGTTGTTTGAAGCAAATCTTGCAGAAATGCTCCCTCCAGGCTGTTGAACCCCAGAGGATGGAAGGCCACTCATGGCAGCATTCCTCTGAGCAAGCGATCCAGGCATATTTGGCAGATTAAAATTTGCATGGATGTTGTGCAAGCCAGAGTGATGGAACGCCCCTGGAACTGATCCAGATTGACCAGAAAAGGATGCTGTAAACGGTCTTCCAGATGAGTCTTGAAGGTTTGATGCAGAATTGTTCAGGTTTGAATTCAGTAGGCCTGACATTGTGACAACAACAAAAGCAAGTCAAAGACTCAATTGTAAGCAGCTAGCCTCCCAATCGAGAGAGTCCGCCCGCGCCTGCGGCACGGGCAGCGGCGGAGAGCGGGGAGGAAGGGGCGGCGCGCGACGGAGGATTCGGCTGCTCGGGGGTGCGATGTGAGGAGGAGGCGATGGGTGCGCGGCGGCGGCGGCGGCGGCTGCGTCTCGGACACTCGGCGATTGTGTGGGAGGGCAAGGGGACGGAAATAGTGCGG

Explanation	CPC Score
noncoding (weak)	-0.929679

Transcript ID	Chromosome	Locus	Ref	Alt
Osa03LNT0233700.2	3	30159145	C	A
Osa03LNT0233700.2	3	30157661	C	T
Osa03LNT0233700.2	3	30157878	T	A
Osa03LNT0233700.2	3	30158963	A	G
Osa03LNT0233700.2	3	30159046	C	G
Osa03LNT0233700.2	3	30161460	A	G
Osa03LNT0233700.2	3	30166275	C	T
Osa03LNT0233700.2	3	30166597	T	A
Osa03LNT0233700.2	3	30168829	A	T
Osa03LNT0233700.2	3	30169022	T	G
Osa03LNT0233700.2	3	30171163	T	G
Osa03LNT0233700.2	3	30171019	C	A
Osa03LNT0233700.2	3	30171272	A	T
Osa03LNT0233700.2	3	30168419	A	G
Osa03LNT0233700.2	3	30169486	T	C
Osa03LNT0233700.2	3	30166285	G	A

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa03LNT0233700.2	osa-miR6248	Cleavage	5.0	21.697	1	21
Osa03LNT0233700.2	osa-miR395f	Translation	4.0	22.401	1	21
Osa03LNT0233700.2	osa-miR396a-3p	Cleavage	5.0	21.667	1	20
Osa03LNT0233700.2	osa-miR396b-3p	Cleavage	5.0	21.667	1	20
Osa03LNT0233700.2	osa-miR319a-5p	Cleavage	4.0	21.017	1	21
Osa03LNT0233700.2	osa-miR167d-3p	Cleavage	4.0	20.163	1	22
Osa03LNT0233700.2	osa-miR169r-3p	Translation	5.0	17.037	1	21
Osa03LNT0233700.2	osa-miR1435	Cleavage	4.5	16.845	1	20
Osa03LNT0233700.2	osa-miR1436	Cleavage	3.0	21.641	1	21
Osa03LNT0233700.2	osa-miR1439	Translation	2.0	20.679	1	21
Osa03LNT0233700.2	osa-miR1846d-5p	Cleavage	4.5	20.305	1	22
Osa03LNT0233700.2	osa-miR2097-3p	Cleavage	4.0	22.194	1	22
Osa03LNT0233700.2	osa-miR2105	Cleavage	4.5	16.404	1	20
Osa03LNT0233700.2	osa-miR2877	Cleavage	5.0	23.226	1	24
Osa03LNT0233700.2	osa-miR5340	Cleavage	4.5	16.404	1	23
Osa03LNT0233700.2	osa-miR5506	Cleavage	4.0	19.065	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa03LNT0233700.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0233700.2	3	nan	Resistance or Tolerance	Drought tolerance	C136	R1618
Osa03LNT0233700.2	3	nan	Morphological trait	Shoot/Seedling	RZ403	RZ630

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus