\
RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0237700.1

ACCATCTCTCTCTCTCCTCTCTCACTTTTGCTCGTTCTCCTCTCTGTGTTGCCGTCTATAGCCGCTGTGCCGCGCCTTCTAGCGCCGCCGTCGCCGGCGGTGCCTCGCCGGAGATCCGCCGGAATTCTCCGCCGCCTCCCCGGTCGCCGGCTGCCGAGCCGAGCCTCGCCGCCACGGCACATCGCTGCCCGGGACTGGGATAGAGCAGCGCGTGGAGGAGGAAGAAGACCTCCTCAACCACTGCCAAGCCGGCCCCACCTCCCTTTCCTCTCTCAAGCCGCTGACAAGCCGGGCCCGCGCCTCCTTTCCTCCATTGGCCGCTGACAGAGTTTGAAGATGAAGACGTCGACCCGACCGCCGAGAAGTATCTCCAGGAGCAAGCCGAGTATGAAGACTTTTAGATGTTTCGTGCCTAGCCCCAAGCCTCGCCTGTGAAATAAGTTAGTTGTCTAGGTTCTTTGCCTAGTGCGTAGTCGCTTAGTTGCTTAGTTCTCCGTGCTATTCATTTCTGCGCCGTCGCTTTTGTGTTTTTCTGTAATGTTGTGTTGTTCATCTATGGGCATGTCCATGATAGCAACGTTTATAAGGACTACTACCCAGTGATGTAATAAAGCAGTTTACTTTGATTCCACATTTATTCTGTGAGTATCAGCTAGTGTATCCTGGGACTGGTACTATATCACAGGTAATGCATAACACCCCGGTGTGAGTTAGCTGTGTTTATAGCTAACAAATGTCGGGGCGTTACAATAACGATCACGTGTCACATTATAAGAAACGTTCTTTTGGAGGACGTATTTTAAAAAACACCCTCCCATATACCGTGTAGGTGTAGATTTGTAAAAAATTTAATAAATAAAAAAAATCCGTTGTGGCCTATGTGCGTATCTCTC

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.904016
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0237700.1 3 32492322 A T
Osa03LNT0237700.1 3 32492704 A T
Osa03LNT0237700.1 3 32493089 T C
Osa03LNT0237700.1 3 32493435 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0237700.1 osa-miR156k Cleavage 4.5 5.905 1 21
Osa03LNT0237700.1 osa-miR1423-5p Translation 4.5 16.691 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0237700.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0237700.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0237700.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0237700.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0237700.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0237700.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus