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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0238200.1

GACCAAAGTTTCTCGTTATACAGGTAATCTAGCTATACAGTTAGTTGGCAATATGAGTTTTGAAAGATGAAAACAGTTACATAGTGGATGATTACAAAACGTGTATCTGGCTAAACAAAGATGCGCCTATCCCGTCTACCCAAAGACCTGAACAGTGTAATCTGTACATTACCAGGCCACTGGCTGATAATTATTCTCTACAGAATGTCGTTCTGAGTTTCTGGCTTGTACGTATAACTGCATGACCTACAAACACTACATGGAGCTATTTTCTGAACGTGTATATATATAGCTGCATATCAGAAGGTGAGTGCTACTTCAGCTGGTTCGAAATACGCATCAACAATCAACATCCTATGATATCGATAATTCAGTCTGAGAATCCTCCACTTGATCTACAACTGGAGCTTCACATGGCTAATTGGTTATGCACATGAGCGGATGAGCCAGGATATCAGTGTGTCAGTTGTACCCTCCTGGCAGTAGGTCCTCATGAGTCTACTCTTGAGCATGCCTAGTTGCCCTTTTTATGCTGTCGTATCATCTTTGTTCTGATTACTTCTCAAACCTGCAACAAGCTTGCATGTCTTCAAGAAAGCATCTAGCAACCCAGGATATTGCTGTAATGTAGGGGAGTAGCGATCAAGAGTTACATATATCTTCTGAAGAAGGTTTAAATGTGAATTAACCTTGTCGCCCAAAATGACAACCTTGGCTTCAGCCTTCTGGAGCTCAGAACGCCTTGTTTCTAGCATTTGTTTGTACCAAAGGCCTATTTTTGTTAGTACAACGGCTTGTCTGACCATGTGGTTGCAATGATCACTCAAATCCTCTGACCTGCTTGCACTTCTTTCTACTGATAATTTTTGCTCGATCTCCACAAATTCCTTTGACAACTTCATAATAGATATTAAAATGCACTCCAGTTGCTTTTCTTGCTCATTTTTGGTGAAAATACCATTATAATCGATATTTTTATTTTCAACTTCCTTCAATGCAGCTGAAGCAATTTCTAAACTTGAGTTAAGTTTGACAAGTTCATCATATTGCATATCTTGCTTGGGAGTCTCATGTGATCTTCTTGGTGATATGTGAGGCGCCACCTCTATATCACGCAAAATGATCTCTGTACTCTCTTGCTTGATGACTTCTGGATCTTCCTGTTTATCTTGGATCAAACATTGCTCTAACTCTGCTATTTTTTCTTTTAACATTCGGTTTTCTTCATTTGACAAACACAAAGCCTTCTCCTTTTCAGATATCATAGCTTCAAGAGAAGACAGTTCTGTACTAAAATTCGTTGCAGCATCATGCATGCTGTTCATAGAATCATCAAGCAACTTTCTTGTA

Coding Potentia
Explanation CPC Score
noncoding -1.16601
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0238200.1 3 32560731 C T
Osa03LNT0238200.1 3 32561355 C A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0238200.1 osa-miR5542 Translation 4.5 14.248 1 21
Osa03LNT0238200.1 osa-miR5817 Cleavage 4.0 6.472 1 24
Osa03LNT0238200.1 osa-miR815a Translation 4.0 6.071 1 21
Osa03LNT0238200.1 osa-miR815b Translation 4.0 6.071 1 21
Osa03LNT0238200.1 osa-miR815c Translation 4.0 6.071 1 21
Osa03LNT0238200.1 osa-miR1862a Cleavage 4.5 15.053 1 24
Osa03LNT0238200.1 osa-miR1862b Cleavage 4.5 15.053 1 24
Osa03LNT0238200.1 osa-miR1862c Cleavage 4.5 15.053 1 24
Osa03LNT0238200.1 osa-miR5487 Cleavage 4.0 6.02 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0238200.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
Osa03LNT0238200.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0238200.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0238200.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0238200.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0238200.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus