© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa03LNT0238300.1
GTTCATGTCAATCTGGGGACAACTTCATTGAATCGACTCTTTCAGAATAAATACAGTACTATGATATTATCGTTTGGACACCACATCAAATTGCCGGTTTCTGAGCAACAACTATATAGGTCACACGGTGTAACTAACATGGATTATTAATTAGCCGGTTTATCCTGTCTGATCATGGGCAGCGCAACATACTGGGGATGATGTCCAACCCAACATAATTCAGAAAGAATTACATGTAAATACGCTCCTCGATGTGCCAAATTGGATCTCTGGCGAATGTTACTTATGATTGAGAAGCTGTGTCTTTATTTTTTTTTCTTTTTGATTCGGATAAGCTGTGAAATTACTGGTATAGTATTGCTGCAAACTTGGGTGATTAGTAAAGGCTAGCATGCGTGGAAGGGCCTCAAATCAGCATTTCCCATGGCTTCTGCTCACTGATGCCCTTCTGGCGAGCTTGTGGTTAGGAGTTACATGATCATCCATATATAACGAGGCTGCGGAATCAGATCGCATAGCATGATTTTGAGCTTGACCAAGAGATTGGAATGTGTCAAGTGCATCAACTGTTAATTGCCAGCCAGAAAGTGGTGAACTACTTGAGCTTGATTCAGTGTTGCTACAGCAAGCTGCTGCCACAGTTCCATTTACCCATGGGCAGTAACTGTTGTGATGCTTAACAGGATCAAATTCTGGAAGTCCTGATTCAAAATCATTTTCTCCATTTGTTGCTCCTAATCCATTCTGAGGGTCATAATCTAACCCCATTGGCACATCACCAGCGATCAATAGTTTGCCAGCCTGTGTCACTTCCTCTTTAGATACATCCAAACCGGTCTGCATCCCTGCATTGCAAGAAAGAGAAGGATGCATCCTGCTTGCATGACCAACAGCATGCCCTCCTATCTTTTCTCCACTCTCAACAGAATCAGCTTTAGTGGAACCATAAATTTTTGAGCCACTGTCAGCTTGGCCGACTGACTGAGACACCATATCTTGGCTATCTCCATGAGGTTCTTGCCGATCAACTTCGTCAGGTACAAACTCATCCATTAGTCCAGGTCCAGGAACTGATTCACCAGTATGACCCATCGTCTCTGTTAGCTCAGTATTAGGTTCTGCATCACCTACAACACTTTCAGCCCTTTGCAAAGAAACATCAATTCCATGAATTTCAGCTTCATGGCTAGCACCCATGCCAACACTACCACCGCTAATTCCTACACTAAGTTGATCCCTTGCAAAAGCAGGGGCTGTTACTGCATCAAGGACTTCCTCCCCTTCATTTGTACTGCTTCCTCCTATTTCCCTTCCATCACTTCCAGAAGCAGGCTGTACACATGCACTTTGCTGTGCTTGGTTACTATAGTTCAGGCCCAAGACATCATCCATTTCAATATTTCTGTGTGCACTAGATGAGGGCATGTCAATATCATTACCATCACCTGGATAGTATTCAACGCTCTCCATGGAGTCTTCATCAGCACTATGAACAGTATCCATTGCAGCTACAGAAGATTCCCTCATAGAATCTCTGTCAACAGCGGCTAGACCTGCAGCTCTAGCATGACTGAATTTACCAGCATCCGCATCAGGATCAAAGCAAAAGTTTCTACTGGGACCAGCTCCAGAAGAAGATGGAAGATAGGAACCAAATAGATCAAACCCACGTGACCTTTTATTCGGGATGTCCGAATCTTGCGCAGCATCATCAACTTCCTCACCATCACGATCTATCACACTTCCTTCTATGCTATCAGCATGCTGAAGCCTGTCCTGTGGCTTGTCAACTGTGCTCCCACCTTCCTCATGGTTGCGCTTCCTTGAGCTTGGACCTCGGGACTCGTATGAAGTTGCATGATCACCAACTTCACTTCCAGTAGGTTGTCCAATCATCAGATCTCTTCCCAATCCTCCGTTGAAACGCTCAGATGCAATTGGTATAGAAGATTGAATTGATGGTAATCCTCCAGCCATTGTTAGATTCAGGTCCACTCCAGCATTTGATAATGATTTACCCTCATTTGTTGCTTCTTCATCACGCCCTTCAGCAGGATCTCTTTCCATCCCATCAGTAACCCATTCATTGATCCCACTGGCAGCGCTAATTCCACGTGTCAGAGCAAGCTTCTTGCCTGTTTCAGGTGCATCAATGTTATTTGGACTAAAACGACAAGGACGTGACACAGATCTAAAGTCCCAGATCTTGACTGTAGAGCCACAAAAGCTACAATCTAACAAAGGTGATCTCATGCTACATCCAGAGTCTTTGAGTGGCCTTTTGCCTTTTCCTTTATCTTTTTTGGCTGACCCAGAGAATGAATTTTTTTGATGTTCAGCAAAACGGGGAAAAAATGGTTCCACCGAATCTGCATTTTTAGCTGAGTGGGTTGAATTTTCTTCACAGTCTTGAACATTTGGAAGCCACCTAGGCTCCCATCCACAAAGGCTTATAAGCTTCCTAGCTTTTGAGTAGCTACAAGAGGAATCTTGCTGGATATCAATTCCTGTTGTGCTCTCTGCTTTGTAACTAAGCTCTCCAGATAAAAAGGTAATTGATTGGGATAATAAGCGGTCAATCTGGGAACTCCTGGTCAGCCTCATGTGCTCAATTGCTGATGAAGCAATCACTGGAAGGGAAGTAAACTGCAGAAGTCCATCACATCGATCTTTAAAACCCCCAATAAGGGCTGATTGTGTTAGGTGGAGCTGCACCAAGCTGTCAGCACAGCTATTGCCTCTCCAGGGACAGCTATTATGGTGTGATGCATCAAGCTGCTCGGCAAAGGCTTCTCCAGCATTTGAAACTAATACAGAACATAGAAAGAAAGGTTTCATAGCTGAGCAAAATTCAGTTTGCAAAGGGAGAGGTACCAATTTATTTTCCAGCCTAGCACAATGGTGAGATATAAGTAACATCAGTCAGACTTGTTATGCAGTAGAATACTAAGCATAGAGTTTTATTGATGATGCGTAATGACATTTTACTTCCTTTGTTGACATAATGTTGGGTGTTAATTCAAGATATGACTTAGTTGTAAAGATGAGATTCATGCAACAAAAGAAAAGATGAATCCTTGTTTTCCGCTGTAACCCCCCAAGTTCCTTATGTCATCTGAAACTTGTTATTTTCTTTTATGCCAATAGATCAGATTTTCTCACCCTCCCTTTGGCACTCCAGTTACGTGAGCAAGCCATTTAGAGAGCATGGAAAAGACTAGAATGCCCTTGATCTCTTCTCCCTGTCTGATGATTGGCTTGAGGGCAAATCGACGAAGAACGTAGTGTTGTCCTTTGAACTCCACAAGATATACCGACTTCTCCACAGTATGGCTCGACAGCAAAGAACCCACAAACCAGTTTTCCCACCATGAGCTAGTGCTCAGTGAGTAACGCTACTTGGGGACACATCCACTAATATGGAGACACATACAAACTGAGATGGGGAGAAATTACGACCAAACAATTCGTCAATAAGGAGACATCAATTTATCTTGGGACATGAACAGATGCGTCAAATAGGAGACACTAATTTACAGAGAATCACCTCGTAATAAAGTAAATGCAGCCACTGAATGCATGTAATCAAATTACAATCAATGAAATTATAGCAAGGGTAGTGGCATGGCCAAGGAGAGAAAATGCTGCATCAGCCATGAGCTCAGGGCCAAGCAGATCGACAACAACCACGTGAAACCAAAGAAGATGAGATCGAGATACTCGAGCTGTACTCTACGCTCTTGAAATGGACCTGATGCACAGCAGGAGACAAGTTGAACCATGTGCCCACCTTAATTTGCTAACCATACGCCTCAAGCTCCTCCCCTGCTCCCCGCTGGAATAGCACCAACTGGCGATCCACATGGAGAAGGGCCAGCAGAGTGATGCGGGTTGAGGCAGCGGTCAGCGGAGAAAAGCAGAGGAGGAAGAGGAAGAATAATAAGAGAGAGGAATAGAAGTTGACACTTGACAGGTAGGCCAGGGGTAGATCGGGGATTTTATCAAAATACTGACAAGCCTTCCACCCCTAACAGTAGCTTTCGACCTGAGGTGACGGCAGTGGCACATAGAAGATGTAAAATTCCATACCATGGCACATAAAGGAACAGTCAAATTTGGTAGGCAAATAAGGAAGCCCATAAACTATGAACGGCAAATAAATAATTCTCAAAAAAAATTCACAAAGGCAATCCGATTTTTTATGACCATCACAATTCACAAGTTTTCAACTATTGTTGATTAGTTCTGCACAAAGAATTTTATAATGGTATTATTTGACTACAGTGAATGGCATTCACATCAGCAAATGCACAAACCAGAAAGCATAAATGTGTTGCTAGTCACGGCATGGTTAAGGCATTACATCATAACTAAACCATGTGAATTGTAATAAGACATACAACTTATTTTCAGAAGTTTATGCTCTCTAATTAGGTATGGGCATTTAAAATAAAAATGTTGTATGATTTGTTTTCCACCATTAAAAGATGCCGAAGCCTGAAGAAACTTGGTAAACCACACATAATATCCCCCAGAAACTTTTCAAACTAACATATTGTCTACAAAAGCTTAGTTACTGAAAACATACCTTCAGCTGGAGACCAGGATGTCAATGTACTGAATATGAGATGTGCACCACATGACTCGCATTCAATTTTGTCCATGTCAACGTTAACCCAACCTCTCCGAGCACAAGCCAAAGAACTAGCAGCCTTAGGCCTAGAAGCCCAAGTTGTAGGCTTATATGTTGCCAGTCGACGAAGTAAGTCTCCGCGTTCCCATGGCCTACATGACGGTGCAGAATCCAAAGCAGTTCCAGTGGCATCGAAACTATGAGAAGGCTGATGGGCATGCGGAGCAACATGTGATGAGGAATCAACTCTGGAAGCTTGTCTGCTACCCGACCAATCTATGCTGGCAACATTAGCTTGCATAGCAGGTGACGAGGGTCCTGCAGAACTTGCAACCGGCGTAGGAGGCGGCTCGGCCGCCGCCCCCGACGAGCTCCTCACCTCCTCCCGCATCTCCCCTCCCCTCTCCTCTCCTCACCTCTCCCCCTCGCCGCGCCGCGTCGCCGCCCCTCTCCTCCTCGCCGCGGCGTAATT
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa03LNT0238300.1 | 3 | 32591811 | A | T |
| Osa03LNT0238300.1 | 3 | 32592890 | A | G |
| Osa03LNT0238300.1 | 3 | 32593121 | A | G |
| Osa03LNT0238300.1 | 3 | 32596460 | G | T |
| Osa03LNT0238300.1 | 3 | 32596569 | T | G |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa03LNT0238300.1 | osa-miR5797 | Cleavage | 4.5 | 13.583 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR5804 | Translation | 4.5 | 17.933 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR5804 | Cleavage | 5.0 | 17.319 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR5817 | Translation | 3.5 | 12.41 | 1 | 24 |
| Osa03LNT0238300.1 | osa-miR5819 | Cleavage | 4.5 | 17.835 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR5834 | Cleavage | 4.5 | 11.857 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR2873c | Translation | 5.0 | 15.86 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR6249a | Cleavage | 4.5 | 20.458 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR7694-5p | Cleavage | 3.5 | 13.378 | 1 | 24 |
| Osa03LNT0238300.1 | osa-miR6249b | Cleavage | 4.5 | 20.458 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR396c-3p | Cleavage | 4.5 | 18.03 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR167d-3p | Cleavage | 4.0 | 16.987 | 1 | 22 |
| Osa03LNT0238300.1 | osa-miR167h-3p | Cleavage | 4.5 | 20.461 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR172a | Cleavage | 4.5 | 15.165 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR172b | Cleavage | 4.5 | 14.959 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR172d-3p | Cleavage | 4.5 | 15.165 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR171i-5p | Cleavage | 5.0 | 18.436 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR435 | Translation | 5.0 | 14.816 | 1 | 20 |
| Osa03LNT0238300.1 | osa-miR810b.2 | Cleavage | 4.5 | 18.621 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR1436 | Translation | 5.0 | 14.952 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR1442 | Translation | 4.5 | 16.755 | 1 | 20 |
| Osa03LNT0238300.1 | osa-miR1847.1 | Translation | 5.0 | 20.421 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR1847.1 | Cleavage | 5.0 | 19.369 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR1860-5p | Cleavage | 5.0 | 16.531 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR1874-3p | Translation | 4.0 | 15.658 | 1 | 24 |
| Osa03LNT0238300.1 | osa-miR2871a-3p | Cleavage | 4.5 | 17.524 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR2871a-3p | Cleavage | 4.5 | 14.824 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR2871b | Cleavage | 4.5 | 17.524 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR2871b | Cleavage | 4.5 | 14.824 | 1 | 21 |
| Osa03LNT0238300.1 | osa-miR1862f | Cleavage | 5.0 | 11.441 | 1 | 20 |
| Osa03LNT0238300.1 | osa-miR1862g | Cleavage | 5.0 | 11.441 | 1 | 20 |
| Osa03LNT0238300.1 | osa-miR812n-5p | Cleavage | 5.0 | 15.234 | 1 | 24 |
| Osa03LNT0238300.1 | osa-miR5340 | Cleavage | 4.5 | 14.047 | 1 | 23 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa03LNT0238300.1 | 3 | qPES-3 | Morphological trait | Panicle/flower | G249 | G164 |
| Osa03LNT0238300.1 | 3 | QFll3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0238300.1 | 3 | QSn3 | Morphological trait | Culm/leaf | G249 | RG418 |
| Osa03LNT0238300.1 | 3 | nan | Resistance or Tolerance | Drought tolerance | R1618 | G164 |
| Osa03LNT0238300.1 | 3 | nan | Morphological trait | Panicle/flower | G249 | RG418 |
| Osa03LNT0238300.1 | 3 | qSBR-3 | Resistance or Tolerance | Sheath blight resistance | G249 | G164 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)