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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0241400.1

GGGACGAGATGGACTCTGGGTCGTTCATCCCAGCGAGAAATGCAATGAAGACCCACAGCATTAGAACACCAATGATGGCAGCCCTTATGGCATTCTCGCAGCTATAAGGAGATGGAAGCTCCGCCTCATCAAAGTTCATGCTTGCGACAGGTGATCCATCATCAATGGTTATCTGGCGAGGTTGGCTCTTGCTGCCTTCCCCTGCCTGTATTACTGAAATATTACGCGGCTTCTCACATTGCGGGCAGCTGCATTTGCCACCAAGAAAAGTTGGCACAATCTGCAAGAACTCGGCTAATGTCTTCTTATATGATTCTCCCTCAAAACGCAACTTCTGCTTTGTGGATGGTTTCAGAACCTAGGTAGATTAGAAAGAACATATAAGTAACATTAGATGTGGTGAGGAAGCAGGACACAATTGTTTGTCATCTCACAGTCATAACTAATGCTAGTTCTGATTTGTAGCCATCCTTGTTTAGGCAGATAGTCCAAGTAGTCAAAACTCAAGCAATTGTGCTCATGAATGAACTATGCCCCCCCTAACAAATGTCTGTGGGACATGCTCTTGTTCATTTGTGGTCAGTGGGGACAGTTAAATAGTTATTGAGATGACATGTAGGTGGAGAAAGTTACCTGAATAAGAGTCTGCGCAATTACTCTGACAACAGGAGGAAGACGCACAATAAATAGTACCCCAAGACGATTTGGATAGTTTTCTTGAACTATAGTGATAAACGACCTCATCATTTGCATTGGAAATCTGAATGGAGAAATCCCATGACAATCCAGCAAAACAGTTATTCTCGGATCTTCTTTGTTGGTCAAGTATACAATACCATTGCTGAGAAGTTACCTACTGCTTGCCCAAACCGAGGTCTATCAGAAGGGGCTAGACTAGAGCATGCAAGACCAAGACGGACTATTAAACAGGGCCGAAGCATAGTATCGAATCCATGCCAAAAAACTAAATGGGACCACTTCTCGAGTTCGTGCAATGTAAGTATATGGAAGGTTTCCCTCCAACGAATTGTCTTCTTAACTGAAGAGAGCAAACTTGAAAAGTCACCATTGGCTGCAATGTAAAATCTGCGTAGTTCATCCTCATTGAAC

Coding Potentia
Explanation CPC Score
noncoding -1.14189
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0241400.1 3 34440486 A T
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0241400.1 osa-miR5797 Cleavage 4.0 14.9 1 21
Osa03LNT0241400.1 osa-miR169a Translation 4.0 18.564 1 21
Osa03LNT0241400.1 osa-miR396a-3p Cleavage 5.0 13.217 1 20
Osa03LNT0241400.1 osa-miR396b-3p Cleavage 5.0 13.217 1 20
Osa03LNT0241400.1 osa-miR169b Translation 4.0 18.564 1 21
Osa03LNT0241400.1 osa-miR169c Translation 4.0 18.564 1 21
Osa03LNT0241400.1 osa-miR396e-3p Cleavage 5.0 13.744 1 24
Osa03LNT0241400.1 osa-miR396f-3p Cleavage 3.5 13.744 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0241400.1 3 qPES-3 Morphological trait Panicle/flower G249 G164
Osa03LNT0241400.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0241400.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0241400.1 3 nan Resistance or Tolerance Drought tolerance R1618 G164
Osa03LNT0241400.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0241400.1 3 spp3.1 Morphological trait Panicle/flower RM130 RG1356
Osa03LNT0241400.1 3 qSBR-3 Resistance or Tolerance Sheath blight resistance G249 G164
Osa03LNT0241400.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0241400.1 3 yld3.2 Morphological trait Seed RM130 RG1356
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus