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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa03LNT0245000.1

AACTTGGAACATCCACTGTAAAACCGATGCTGAAGCGCTTACAGGTGATTGCGGCTTTGGCTGATGCGGCGGTGAGCACGTGCAGCTTCCAGAAGACCTCCTCGGCGGCGTGGGTGCTGTTGGCGTCGACGGCGACGGCGCCGATGAGGGCGCGGAGGGCGCCGCAAACGACGGGTGGGGCGGTCGGTTTGGTCCCGGCGGCGACGCGCACGATCGAGGGGATGCCGACGCGGGCCGCGGCCGCGACGCAGGCGGCCTCCCCGGACGCGTCGCGGGCGCGGCGGGAGACGGCGGAGGCGGAGGCGTCGTGGTCGGCCGCGAGGGCGCGGAGCGCGGCGGCGGACTGCGAGGCGGCGAGGCCGAGGACGGCGAGCGCGCGTCCGTTCTCGCGGGAGTAGGAGGCGTGCGTCATGGCGCGGCGCAGGAGGTCCGGGGCATGGAAGCGGTAGGCGATCTGGTTCTGGAGCGTGGCGAGCGCGGCGTCGAAGGGGGATGAGGAGGACGGCAAGGCGTGCGAGCGAGAAGAGGGGATTGCGACGAGGATGACGACGAGGAGGCTGAGGACGTGAGCCATGCCCATCTATCTGCTCACTGACCCTTGATTGATCCCAAGGAAATTGGTAAAGTGAAGAAGAG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.742873
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa03LNT0245000.1 3 35986556 A G
Osa03LNT0245000.1 3 35986812 T C
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa03LNT0245000.1 osa-miR1437a Cleavage 5.0 24.563 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa03LNT0245000.1 3 qLT3-1 Morphological trait Shoot/Seedling RM227 R1925
Osa03LNT0245000.1 3 qPL3-1 Morphological trait Panicle/flower R1925 RM227
Osa03LNT0245000.1 3 spp3.1 Morphological trait Panicle/flower RM130 RG1356
Osa03LNT0245000.1 3 yld3.2 Morphological trait Seed RM130 RG1356
Osa03LNT0245000.1 3 QFll3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0245000.1 3 QSn3 Morphological trait Culm/leaf G249 RG418
Osa03LNT0245000.1 3 qSV-3-2 Physiological trait Germination/dormancy RM227 RM85
Osa03LNT0245000.1 3 nan Morphological trait Panicle/flower G249 RG418
Osa03LNT0245000.1 3 Qbp1 Resistance or Tolerance Insect resistance R1925 R2443
Osa03LNT0245000.1 3 Qsbn3b Morphological trait Panicle/flower RM227 RM85
Osa03LNT0245000.1 3 Qsnp3b Morphological trait Panicle/flower RM227 RM85
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus