© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0246800.1
AACTACTCTTATATATTTCCTTCTCTCTCTTTTTTTTTCAAAAAGAAAATTGCACCATTGGTACAAGAATTTGGGAGCTGTGTTCATTTAACTATTACAAAACTTTCAGCCCATGGGTATAATAACTCGGTAAGTATTTACATAATTACATTTGAGTACAATAACTTAAAAATTGACCGTGCCACTGAGACTGAAACACCCTTAGTAGCTAGATGTGCTCTTGGTCAGTGTTGTCATCTCCATTCTTAATTAATTAGAACTACAGCACTGAAAACAAATTTTATACGTAAAAAAGACAGTTCAGATGATGCTCCAATTGGCCGTCACAGCAAACCATCTTCTTCAAGAAATCAAGGTGTAGACACTGCGAGAGACTTGAAAATTTTCTCATTGATCCGCTTCAGCCGAGACAGTGCATCGTGCATACTGATGCGTGAGTCAGGGGACTCCCGAACGCAACATAATGCAACATCCACCATGGGAACTAAAAGAGTCTCCAACAGCAGTTTCGAGTCCACAGTATCAACCTGCTGTTGTTGCTGCCCATCAGCTGAGGATTCTTCAGAACCTGTCATCATAAACCGCTTGTCAACAACTTCATCAGCTTGGTGTGGAATTGACGCTCGCACCCATTTTTCCAGGTTCATCTCTCCTCCAAACATTTGATCTACAGGACTCTTTCCTGTGATCATCTCAAGGAGCATTATCCCGTAGCTGTAGACATCACCACTTGTCGATGTTTTGGCTCCATATCCGTATTCTGGAGGTATATAACCTATGGTACCCTTCATATTGTGAGTGGTAGAAACAGATTCCTCGTCTCTAGCAGATGTTTGTGTGTGCAACCTTGCAAGCCCAAAGTCACCAATCTTGGCTGTCATATCACCATCAAGTAGAACATTGCTTGGCTTGATGTCACAATGTACAACTTGACCCGCCCTGCATGATCCATCATGCATGTACTCCAAGGCACTTGCTATGTCAATGGCGATAGAGAGTACTTCAACTGCACTGAGCCCTCTTTCGCTATCCTCATGCCGCCTTGGGCCATGGATCCAATCCTCAAGGCTTCCATTTGTCATAAACTCGTACACCAATGCACGGAATTCATTTCCACTGAAGTCTATACTTGAGCATAGTGTCACCAGCTTTACTAGGTTCCGATGTCGTATAGTGCTTAGAATCTCGCACTCTGCAACCCAGCTATTGGTTGCACCAATCTTGTTAAGATCTAGCACTTTGACAGCAAAGGGACTAGTGGCATGCAAGACAGCCTTGTACACAGAGCTGAATGAACCAATACCAACAAGGTTCCTTTCATTAAAGTTTTCAGTTGCATGGTATAGTTCTTCATAAGAAATAAGTGGGTAGAGTTTTCTCTTGAGTATCGAATCATCAACTGCGGTTCCAACCTTTGTGGCATCAATCCGCAGGTATTTTGATTTCCATAACATGAACATGACACCCACAAAGATAAGTAAAATGACTGTTGATGCTATTGGAACTGCTAATACAACCACTAGCTTACGATGGTGTTTGGAATATGATCGGAATACTGTTGACTCCATGTTATATAACTCTCTGTTACCATGGATGTCAGCAGCAGAGTTGTTCTTAAAGATACCGCCACTTGGCACCAGACCCTTCAAATTGTTGAAGGAGAGGTTCAGCTTCTGAAGAGCTTGCAGCTTTTCAAGGCCTTCTGGTATACCACCAACCAATTGATTGTTGGAGAGGTCTAATATTTGCAAGCCCTTAAGATTCTCGATTTCTCTAGGAATTACTCCAGAGATTGCATTGCCACACACGGACAAAGACTGAACGCTTTGGCACTTACCAACTGATGTAGGGATACTGCCATCTAGCAAATTGTAGGATAAATCGATGGAAACGATGTTCCCTAGTCGACCGATGCTCTCTGGTATAACACCGGTAAGTGCATTGTATGACATATTTAGTATAGAGCTAAGGCTGGTAAGGCTAAAAATTGTGTCAGGGATACTCCCATTGAGCTTGTTACATGAGAAGTCCAGAGAAAGTATGTGGCTCAGGTGGCCCAACTCCTTTGGAATGCTACTCACTAGTCTATTCTTGCTTATGTCAAGCATTGTCAGTGCAGTAAGATTTCCGAATTGTGTGGGAATCGGCCCAGATAAGTTGTTTCCTGATAGCCCAAGCACATTTAGATCCTTGAGATAACTGATCTCCAATGGGATTTCTCCATCTAGTAGGTTATCAGTCATGTTTAGCAATGTTAATCTAGTTAATCGCCCAATCATTGGTGGTATGTGTCCAGTGATCCTATTGCCACCAATGTATAGATTTTCAAGAGAACTTGATAGATTACCGATTGAATCAGGGATCTTACCCACAATTTGGTTCTCATAGATACCAAGGTACTCGAGTTTAGTACTGTTTGTGAGATCGTCCAATATGCTTGTGGTGTGAACAATTTGGTTAAACCCTATATTGTACCAAACAAGCTTGGAAAGACGTTGGAGGCCTGGAGGGACCTTGCCAGTGAGGAAATTGTGTGATATCCTTATGCTATGGATCTTAGTTATGTTGTGGAGAGATGGCGGGATCTGCCCGGTAAGCTTGTTGTAGCAAACAATGAAAATGTGGAGTTTGGGTAGCCCTAGACTAATATCATTGGGTATCTCCCCGTGTAACTTGTTCATCGCCACTGCGAAAAAGGCTAGGTTGGAGATGTTGTAAAGCTGTCTTGGAACTGTGCCTGTGAGGTTGTTTATGGAGAGATCAAAGTACTGGAGATGGCGAAGGTGACCTAATTCTTCAGGAATTTCTCCAGCAATAGTGTTTGTACTAGCATCAAGGGTGGTTAAAAGTGACATGTTACCAAGAGATGGTGGGATTGCACCAGTCAACTGGTTCTGTCCAAGTTTTAGTATCTTAAGATTTTGCAGAGAGTGCAAGCTAATAGGTATCATACCCGTGATGCTATTTGCTGATAAATCCATAGTCACAAGGTGGGTACAATTGGTTAGACCTGAAGGAATGGACCCACTAAAATGGTTGGAGCTTCCATTTAGTGTCTCTAGCAGGGAAAGCCTGCCAAGCTGATCAGGGATATTGCCAATGAACCTATTTTTTTGTAGATAGATGGATTGGAGGGCTGAGAGGTTACCTATGTCAGGGCTTATTTGTCCAGCCAAATTGAGATTTTGTACATCGAGCATGGAGACTCTACCTTGGCGATTGCAGCGCACACCAGCCCAAGAACACACAGAGGAGCCTTGGTTCCAGGATGATAGTGCAGCCATGGGGTCATCAGTGATGAGAGATTTGAAAATGAGAAGGGCATCATGGTCTGTATAATTGCTGTGGGCAGCTGATTGAGATTTTGTAGTATCATTTAGCAGGAATAACGCAGTGCATACTACAAGCAAGGTTCCAGAAAGGTACTGCAGGCTGGTGCTCATGATAAATTTATGATGTGGCAATAAAAATTTTGAAAAACCAACAGGATGTCTGCACTGATATGTTGGTGTAACTAATTATACATTGCTTGTCAGTGAAATTGCAGAGAAAGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0246800.1 | 4 | 1359501 | A | C |
| Osa04LNT0246800.1 | 4 | 1358334 | G | T |
| Osa04LNT0246800.1 | 4 | 1358343 | A | T |
| Osa04LNT0246800.1 | 4 | 1358345 | A | T |
| Osa04LNT0246800.1 | 4 | 1358383 | A | T |
| Osa04LNT0246800.1 | 4 | 1358393 | G | T |
| Osa04LNT0246800.1 | 4 | 1358427 | A | G |
| Osa04LNT0246800.1 | 4 | 1358747 | C | T |
| Osa04LNT0246800.1 | 4 | 1358751 | C | T |
| Osa04LNT0246800.1 | 4 | 1358885 | G | C |
| Osa04LNT0246800.1 | 4 | 1358915 | G | A |
| Osa04LNT0246800.1 | 4 | 1359046 | C | T |
| Osa04LNT0246800.1 | 4 | 1359093 | A | T |
| Osa04LNT0246800.1 | 4 | 1359183 | T | C |
| Osa04LNT0246800.1 | 4 | 1359257 | T | A |
| Osa04LNT0246800.1 | 4 | 1359421 | C | T |
| Osa04LNT0246800.1 | 4 | 1359558 | T | C |
| Osa04LNT0246800.1 | 4 | 1359696 | A | G |
| Osa04LNT0246800.1 | 4 | 1359851 | A | G |
| Osa04LNT0246800.1 | 4 | 1359876 | A | G |
| Osa04LNT0246800.1 | 4 | 1360212 | A | G |
| Osa04LNT0246800.1 | 4 | 1360350 | G | A |
| Osa04LNT0246800.1 | 4 | 1360359 | A | G |
| Osa04LNT0246800.1 | 4 | 1360929 | A | G |
| Osa04LNT0246800.1 | 4 | 1361085 | A | G |
| Osa04LNT0246800.1 | 4 | 1361208 | T | C |
| Osa04LNT0246800.1 | 4 | 1361340 | C | T |
| Osa04LNT0246800.1 | 4 | 1361520 | A | G |
| Osa04LNT0246800.1 | 4 | 1361528 | T | C |
| Osa04LNT0246800.1 | 4 | 1362059 | G | A |
| Osa04LNT0246800.1 | 4 | 1362093 | C | T |
| Osa04LNT0246800.1 | 4 | 1362056 | G | T |
| Osa04LNT0246800.1 | 4 | 1361352 | T | C |
| Osa04LNT0246800.1 | 4 | 1362007 | G | A |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0246800.1 | osa-miR5815 | Cleavage | 5.0 | 14.166 | 1 | 24 |
| Osa04LNT0246800.1 | osa-miR6251 | Cleavage | 5.0 | 12.791 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR395c | Cleavage | 4.5 | 20.485 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR160e-3p | Cleavage | 4.0 | 22.396 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR444a-3p.1 | Translation | 3.5 | 17.944 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR395o | Cleavage | 4.0 | 20.485 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR444d.1 | Translation | 3.5 | 17.944 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR1861c | Cleavage | 5.0 | 22.6 | 1 | 22 |
| Osa04LNT0246800.1 | osa-miR1866-3p | Cleavage | 4.0 | 20.224 | 1 | 22 |
| Osa04LNT0246800.1 | osa-miR2871a-3p | Cleavage | 3.5 | 13.744 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR2871b | Cleavage | 3.5 | 13.744 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR5502 | Translation | 5.0 | 23.101 | 1 | 22 |
| Osa04LNT0246800.1 | osa-miR6248 | Cleavage | 4.5 | 16.929 | 1 | 21 |
| Osa04LNT0246800.1 | osa-miR2055 | Cleavage | 4.5 | 13.189 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0246800.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0246800.1 | 4 | qOVA-4 | Resistance or Tolerance | Insect resistance | R1854 | C946 |
| Osa04LNT0246800.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0246800.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | C946 | R1854 |
| Osa04LNT0246800.1 | 4 | qCTS4-1 | Resistance or Tolerance | Cold tolerance | RM335 | RM261 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)