© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0249200.1
CTTGTTACAAGTCTCGACCTAGCTCCTTAAGCTCATGAACCAGAGCAATAAAAATCAGCTCAAAATCCATCTGTGTTGACAACGATGGCCTCTTCAAGTATGGCACGTAAAACAAGAAAAGTCATTAGCGTGTGATTAACTGTAATATTATACTAGATGATTCCCCGCGCGTTGCAGCGGAATTTACAGAAAACAAAATGTACATAGCGTAAGCTTGACAAATGAAAGGAGAAAAAAATTGAAAGCAAGTTAAGGGGCTATGTTCTTCTCATAGATTACCTATGCAAACTAACTCCTCGAAGACAACTTTAAAATGTATATGACATACTGCCCATACGGATAGCTTTATGACCAAAACAGTAAAAGAACGATTGTTCTTAGTTTGATATGCTGATTGTTCTTAGTTTGATATGCTGTACAGAGAGCAACAAAGTAAAAAACTTCAAGTGCTTTCTGAACCCTTATTATGGATGAGCTTCATGGAACCAATCGCCTGCTGTCACAATAACATCGAGCAAACCCATTTCGACTCCTGAGCATATCTGGTAATTGTATCTCAGCTAGGTCATGTAAAAGGAACCCTAAATCGTGCCTCCATATAAAAAATTAGTTCTATAAAGTGAGGGCACAGAAAATATCATTGACCTTTTTAGATTGTCCTTTGCAACCAAGTGTCAGTGATAAGACTGAAAGGATGAAAGTTGAAATTTTAGTAAGAATAAGAATATGCAGTGCACTAAGCAAATGGGGTAAATGAAAATAAAGATCCAATATGCGATACCTTAATAGTCATGAAATAATCGAAAAAATAGAGTGAAATCTTGTACTTACCAATTGAAATAATCGAATAGTCATGAATTATTTAATTTCTCTAGAGCATAATATACTTGTGACATCCAACCAATAACATAATGTGAGCATTGATAGTTGATCTCTAGCAATATCTAAGACGTTAACACTTATTTCTTCTCCTGAAAACAGTTCTCAAAATTAGTGTTACTAATTCTTGCAGAAGAGAAACTCAATTCCTCGGCCGATCAAAATAACTTACTTTATTTGCTGATACAACTCCATCTCTAGAAACAACAAATTCTTCTTAATTGTCTCCAACTTTGGTATAGATGTTATAGAAAACTATTTCTGGCAAAATGAAATAAGGAACCAAATGCAGCTATACACCTGAACTTAGATGACAAAAAGTGTGCAGCATGCTTATGCTTACTCGATAGGGAATTAGGGGTTTATATAGAACATCACATTGATAGATCTGCTAGAGACTGGTAGTAACAGAGGATCCTATCAACTCCTTTCTGCAGTCCAAAACCCAAAATACTGATAAGCAAGAAAAGAACATGCGGACAATAACGTGTTGCATTGCTGTAGTACATACCAGAAGGTTGACACAATACAACAGTTTGACAGCAAGAGAATGAACAACCTTATCTTTTCATCGTCTCACATTTACAGGAGTTGCAGCCATTGGCGTGATGAATAGATGTTGACTTGAAGATAAAATCCAGTTATGGAGTGATGACTCTTCAGATAATTACTTCTATGCTTCCGTTTCCTTATGGAGTGATGGAACAGCTCCCAGAGAAAGCGATCAGCATCATAAACATATATCTGCTCAAAATTGCATGAGCTATCATAGATTCTAATGCCCTGGCCCCTGGGCTGTCCAACTAAAGACATGGATATAGATGCTCGTCATGTGACGAACAATCATCAGCCATAAATAAAACCAATCGGTTAGGGTCAAAACCATCAGAAATTCAGCATCACCGAGGATGAGACAAAGAGCAATAGTTGTATGCACTTGCTGCTTGACTGCATCAAACGGCTGGTTAGCATGTTGCTGGAGCCTGGAGCCCTGGAGCACGAAATCCTCTACTTGAACACCAAATAATCCAAAATTGAGATCTACGCAAAGAAACAACACAAAACGTAGGGGAAACCATAAATCTGCCCCCTGATGAACTTGGTGTCCGACGACAGCGACGCTGCCAGTGGCCGGGAACCGGAAGGGGCAGAGAAGCGAGTAAATCAAACTACAGGGTGGGTGACCTTTATTACGGGCATGGTTTCTGGTGATTGATGGTCAATGATTTATAGTGTGGGAGGCAAAGAGGATGCAGGAAGGGGAGACGAATCGTGCGAGACGACGGGTGCGGAGCGACAACGGTGAGATCAATGGGGGTGAAGTGGATGCGGGAAGGAAAGACGAATCGATGCAGGAGCAGGACACTCATTACTCGTGTGAGTTGTGGGAGAGCGATCTCGGCGGTCCGGGAGAGGAAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0249200.1 | 4 | 5169438 | A | T |
| Osa04LNT0249200.1 | 4 | 5167745 | A | G |
| Osa04LNT0249200.1 | 4 | 5167810 | T | A |
| Osa04LNT0249200.1 | 4 | 5167857 | T | C |
| Osa04LNT0249200.1 | 4 | 5167885 | T | C |
| Osa04LNT0249200.1 | 4 | 5168723 | A | C |
| Osa04LNT0249200.1 | 4 | 5169020 | G | A |
| Osa04LNT0249200.1 | 4 | 5169162 | G | A |
| Osa04LNT0249200.1 | 4 | 5169279 | A | G |
| Osa04LNT0249200.1 | 4 | 5169449 | A | G |
| Osa04LNT0249200.1 | 4 | 5169623 | A | C |
| Osa04LNT0249200.1 | 4 | 5169702 | T | C |
| Osa04LNT0249200.1 | 4 | 5169812 | C | T |
| Osa04LNT0249200.1 | 4 | 5169873 | A | G |
| Osa04LNT0249200.1 | 4 | 5169891 | T | C |
| Osa04LNT0249200.1 | 4 | 5170055 | C | T |
| Osa04LNT0249200.1 | 4 | 5170349 | A | T |
| Osa04LNT0249200.1 | 4 | 5170504 | C | G |
| Osa04LNT0249200.1 | 4 | 5170513 | T | C |
| Osa04LNT0249200.1 | 4 | 5168962 | C | T |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0249200.1 | osa-miR5831 | Translation | 5.0 | 24.385 | 1 | 24 |
| Osa04LNT0249200.1 | osa-miR5831 | Translation | 5.0 | 12.948 | 1 | 24 |
| Osa04LNT0249200.1 | osa-miR1859 | Cleavage | 4.5 | 12.206 | 1 | 22 |
| Osa04LNT0249200.1 | osa-miR1869 | Translation | 4.5 | 14.796 | 1 | 24 |
| Osa04LNT0249200.1 | osa-miR3979-3p | Cleavage | 4.0 | 11.84 | 1 | 20 |
| Osa04LNT0249200.1 | osa-miR5147 | Cleavage | 4.5 | 15.353 | 1 | 21 |
| Osa04LNT0249200.1 | osa-miR1863b | Translation | 5.0 | 21.459 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0249200.1 | 4 | qSNP-4a | Morphological trait | Panicle/flower | RM401 | RM335 |
| Osa04LNT0249200.1 | 4 | spp4-2 | Morphological trait | Panicle/flower | RG449 | CDO456 |
| Osa04LNT0249200.1 | 4 | qCTS4-1 | Resistance or Tolerance | Cold tolerance | RM335 | RM261 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)