>Osa04LNT0258100.1

TGTATGCGCACTTGATATTTCAGCCATGAACTCGTGTGTACCAGACTACTTGATCCAGGGAAATGGTAATGTTTACATGATTGATTCCTGTTATAAAAACGGGGGTCCAGATGCACTTACCCTAACCAAACGTGCAGGGAGGCCAAAATCGGCAGCGCTATGGGGCTCCGCCTTGTCGAGGTCGGAGAGGAAAAACAGGAAGCAGATCGTCGAGTACTGGCAGAACGGCGATGGAGGCCGGCGAAGATCATCTGCACTCGGCGGAGAAGCTCCAACGGCAGGAGGGGGCTGTCGCGACGGATGCTCGGTGGGGAGGGGATCTTGAGGCGGCGAGAACCCACTTCCGTTGTGGAGGATGCAGAGGAATACCAGCGGCTCCGCTCGCCGTGGAGAACGGCGGCGGTGGCCAGGATCCACCGGGCACGACGCTAGGGTTTCTTGGTCGCCGGATGCGTCGCACAATGGCAACGGCGTGAAAATTTCTCTCAATGTTGAGGTAAGTAGATAATTTCGCAGCCGAGCCGAGCCGACCTAAACTAAATGGGCCGGGCAACAGCCTGCAGCACATTGCAAGCTCGAGGCAGCCGGTTTTAGTCTAG

Explanation	CPC Score
noncoding	-1.14683

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0258100.1	4	16900765	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0258100.1	osa-miR5531	Cleavage	4.5	20.58	1	22
Osa04LNT0258100.1	osa-miR444a-3p.1	Translation	4.5	20.58	1	21
Osa04LNT0258100.1	osa-miR444b.1	Translation	5.0	20.58	1	21
Osa04LNT0258100.1	osa-miR444c.1	Translation	5.0	20.58	1	21
Osa04LNT0258100.1	osa-miR444d.3	Cleavage	4.0	19.507	1	21
Osa04LNT0258100.1	osa-miR444d.1	Translation	4.5	20.58	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0258100.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0258100.1	4	nan	Morphological trait	Root	RZ69	RG449
Osa04LNT0258100.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785
Osa04LNT0258100.1	4	spp4-2	Morphological trait	Panicle/flower	RG449	CDO456
Osa04LNT0258100.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0258100.1	4	gwt4a	Morphological trait	Seed	RG788	RG190
Osa04LNT0258100.1	4	nan	Morphological trait	Panicle/flower	RG788	RZ69
Osa04LNT0258100.1	4	An8-glum	Morphological trait	Panicle/flower	nan	nan

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus