Transcript

Sequence

>Osa04LNT0263600.1

TCGGGGAAGAGAGAAGGGAAGGGCCTCTTCGTCGGCGGCGACCGCGAGCTTCCGCTTCCGACATAGCATCGCCGCTCGCCGGATCGGAGAGCGAGGGGAGCACGCCGTGCGCGAGGAGGGCAGCGGGGGCGCGCGGGGGATACGGTTGGAGGCGCTTCAGCTACGGCCGGCCGAGGACCTGCGGCGAGTTGGTTCCGACATGCTTAATTCGAAATAAACAGGATGAATGAGGGATCTTGAAGAGCACCAGGTAGCTTAGTTTGGTCTAAACTTTACCAGAATGTCGAAGAGATTGTGGGTGATCCCAGATATCTTGTACATAAGGTGAGAATATAGTAACCTCTCCTGTTGGAAATACAAAGAAAACTGAAGCTCCAAATAGGGATAACCTCCAAATATGTTCTCACTACAATCTTGCTATTGCTAATCGCAGTACCATTACAAAGCTCCATGAGTTCACGGTAAAAAAAAGTTCTCTGAGTTGAATGATACCACCC

Coding Potentia

Explanation	CPC Score
noncoding	-1.47509

Genome Browser

Expression

Axis x: Treatment
Axis y: FPKM
Value above bar: Standard deviation

Variation

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0263600.1	4	21644068	A	G
Osa04LNT0263600.1	4	21644608	G	A
Osa04LNT0263600.1	4	21645132	T	G
Osa04LNT0263600.1	4	21645521	C	T
Osa04LNT0263600.1	4	21645734	T	G
Osa04LNT0263600.1	4	21646717	A	T
Osa04LNT0263600.1	4	21646933	T	C
Osa04LNT0263600.1	4	21647080	C	T
Osa04LNT0263600.1	4	21647154	A	G
Osa04LNT0263600.1	4	21647275	A	G
Osa04LNT0263600.1	4	21647596	C	T
Osa04LNT0263600.1	4	21647642	G	A
Osa04LNT0263600.1	4	21648235	T	A
Osa04LNT0263600.1	4	21648688	G	A

Transposon

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

small RNA targets

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End

QTL

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0263600.1	4	nan	Resistance or Tolerance	Other soil stress tolerance	RM5586	RM3916
Osa04LNT0263600.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0263600.1	4	orl1	Morphological trait	Culm/leaf	S10628	C377
Osa04LNT0263600.1	4	qFRP-4	Physiological trait	Source activity	RG788	RZ565
Osa04LNT0263600.1	4	qCCFJ-4	Physiological trait	Source activity	RM261	RM3785

pre-miRNA

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

GWAS

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus