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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0264100.1

AGCTTGAATCATAAAACATTTTATACGACAAAGCATGGTCGAGTGACCAAGCCTGCAGGCTGCAGCTAACTAGACCATGCACAGTGATTATGCTTCAATATAAGAGAAGTAGAGAACAATCTTGTTTTGAAAGTAAAAAAGAAGGGTTTGATTCCCAACGCAGTAATGTGGCAGTTTTCATACCCCCAACTTAAATCCTTATTGCGAATTTTCTACTGCCATCTACAGATGGACAAGAATATCGGCAGAAGCTGTCCACATTTACAAGATTCAAGATGTTTGAGCATGAATTGATCTAACTTCCTTCAGTTATATTTTTACCCTCCCAAAGAGGAGGGAAATGCCATCCTTCAGCAAGATACCGCAGTGTCTGGATACTTGCGCACAGCATTTGCCAGATCCTGGACATGTGGATCAACAACTCCTATTTTGTTCAATGCATCCTCAAGTTTGAACAGGTACTCTTTGTTAGGTCCAGATGGGCCTTCAGCTAGGTAAATTTGCTTGGCCATTTCTTCCAGCGGTGCAGGACCAAGGTAGTTTTGGTTGCTCTGCTTGTTTGTTGTGGCTAAGTATACCATCACATTTTTGACGGCTGGTGTTTTTGGTGAGGAGTCCATATACAAATCAAGGTAAATCTTCTCATCATATTGCTTCTCTCTTACTTCCAGATGCTCCAGAGCTGTCTGCTTATCTTGTTCCGTTGAAATTTTGTAAGCAACACCCCACTACATCATAAAACAAAGAGATTCATTTACAAATTCAATGTATGCACTGAGAACAGGGTTACTTGGCCTGCAGAACAGCATAAAAAGATGGAAGAGAACATGCCAAATAGCTATGAGATCATTAGTCCATTTTGCATATCACAAACAAGCTCCTTTTTTACCATTTGTACCACCCTTCAGAGTTCAGATCGATCTCGGTATCTCAATGACCATTTTAATTTGGACTGCAAGAGAGTCTCAGTGCCACTCTTTTACCATTACTGCAGAAAGGTCTCCCCTTATAGCCCATTCTTAAATACCTTAGGAAGTTAGGATACAGGATTACAAGTACACATCTGATTATCTGATGATCATTGTTTTCATCCGATCACTGATACACAAACTCATACTTACTCCTTATTAGCATGGCTGACCAGTAGTACCTCAGTTTCACAGATGTACCGAAATAAAGATATCAACAACAACAACAACAACAAAGAAGCATCTTAAAGCATAATGTAATCCATGCTCAATTCAACACAAGGATTAACGATTAGCAAGTCGCGTAGCACATCAACAAAGAACATATGAGAGAGAAGCGTTACGCATGTGGCGCCGGGCTGGTGCTCGAGCGTGACGGTCCTCCCGGGGAACTCCGGCGTGCCCCTGTGGTCCGTGCTCCCCTGGTAGAAGACGCGGCGGTAGTCCCTGACGAAGCCGACGAGGCGGGCGTCGTGCGCGAAGCCGGGGTTCCAGACCAGGGACCCGTACCCGAACACCCACATCGCCATGGCCTCCGCGCTCCCGGCTGCTCCGGTGGAATGGCGT

Coding Potentia
Explanation CPC Score
noncoding -1.22838
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0264100.1 4 22355875 T C
Osa04LNT0264100.1 4 22356357 G C
Osa04LNT0264100.1 4 22355476 T G
Osa04LNT0264100.1 4 22356732 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0264100.1 osa-miR166a-5p Translation 3.5 19.039 1 21
Osa04LNT0264100.1 osa-miR166e-5p Translation 3.5 19.039 1 21
Osa04LNT0264100.1 osa-miR5144-5p Translation 5.0 20.954 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0264100.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0264100.1 4 qCCFJ-4 Physiological trait Source activity RM261 RM3785
Osa04LNT0264100.1 4 nan Morphological trait Culm/leaf RM3337 RM3785
Osa04LNT0264100.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0264100.1 4 orl1 Morphological trait Culm/leaf S10628 C377
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus