© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0265500.1
AGGGTACATCACGCTTTCACAACTTTTTGCCAGATTCCGGCATAACATCACTAGTGTTTGCCGGACACTGACATCCCATTTTAGGTTGCAGGAATATTTATCCAGTTAGGCCTTTCAGATGTTTTAGATTTACAAAGGAAGGTGACAAGGAGACACTACAGATAAAACAATGTTCGTGTCTACATTCCAATTTGAACAGCGCGTCAACGGGCTGTGTCAAGAGGAGGCCAACCAGAAAACTGTGGTCAGAAACGACGAGGGAAAACGCAATCTGGACATTGAAGGCGCGAGCACAACTTCACCAACTGCAATTCGATGAAGATAATCCATCTACAGGATCTAGAGATCCATCTACTCTGATTCACCAGGGTGTAATCCACATTCTAATCTGACGGCTTCCAGGAGCTGAGGTGATATCACCTCCTTTTCAACTTGTTCTGTACTATTATTTCCACTTAAGCTATTCTGGGCCACATCTGCTCCCCAACCCCTGTACAAAATCACTTTGTTGGGCTCCCGCGACACTAGAACCGATCCAGTTGCTTCCTCTAGTTCTGAAATCAACTGCTGAATTGGAGTTCCGTCTGCTCGGTTCTTGATATTCACAATAGCAAGAGGATGCTTCTTGAAGTGTGTTTTTATTGCTTTTGCGACTCCTGTGATGACATTGTTCCTCCCAACAGCGAGTACTGGCCGTTTCTTCATTTTCAGAGCTTGCTTCCTTAGCATGAGCCTTTCTCGGTTTGAAAGTGGAGCAGCTGCGGAAGGCAACTGAGAAGATTTCTCATCCAATTTCAGCTCGTGTACAGGTGTAAGGGTTCCTACAAATTTTGAGCCACTTACTCTGTGACTATCTGAATTGTGCATCACAGAAGAACTAAGTGGACTTTGGTGTGTACTCTCAGATGAAGTACTTGTACTCTCAGTCAGACAGGAACTTGTAGTTTCAGACAGATCATCTGTATGCTTGCTGAAACATAACAACTTGTTCTGCATAACATCCAAGGGAACTCCAGATTTGGTTAAAACTGAGGTTCCCTCTGTTTCACTTTCACCTGAAGAACACTCTACAACCACTGACTTGGCACACTCAGGAAGAACTTCAGACACTTCTTCTTTTTTGTCCACTAATGTTCCAGAATTAACATTGAGATCAAGAATGCCTTGGTTGTGGTGGCCTGAGTTCATTCCATTAGTTGGAGTAACAGGTTGAACCTCCATTTGTTTAAAAAACATCTGATCCTTCAAGTAGTCTATATTCTTTGAAAGATTAAGCACATGAAGCTTCAGGGACTTATAACGCTGATACTCCACAGAACGCTTCAAAGCATCCTTTTTATTTAACAAAGATTTTGGCCTGAGAGTTGATGGCCTCTGATAGTTCTTTCCCCGATATATTATAATTGCATGTGCTTTGCTCACTCTTTCCACTGCCACCAATATACCACCACTCTCAGCCTCTAGAGTTCGAGCAGCATATTCAACATCTTTAATGTTGTGTTCTTTACATATAATTTTGACAAGTTCTCGGTACTTCCAGTGAAGGTGCATATTTTCAACAGTTCCATCAAAAACTCCTCTCCTTCCTAGCAATAAGAATGATTTCATCTTTAAACCAACTTTCCTCAACATGTACCTCTCCTCTTCTGAGATAACCTCTCTAGTTTCAGCTCTAGAAGGCTCAGACGACATTTCTAGCTCTTCAATAAGCTTTTCAGTCTTCTCTTTCTCTGCAATTGCCTGAGATAATCTGGCCTCAACATTCTGGGCAAACACATTAAGAGATTCTGCTCTATTATCTGAAACTGCAGTTTCATCTTTATGCTTCTTTTCATAGCATTCATGCCCATCTAGTGAGACATCAGTAGCCATCTTCAGTTTAGAAGAATTTTGCGGTGTGCTTTTGTCAAAATTAAGCTTAGGGTTACTGATTGTAGAATTGCCATACTTTCTACGCTTTTCTATTGCAAGAGAGACAGCTGTGGGCAGGAAATCTTTCCCTCTGTAGAATACAATTGACTCATTATCCCTTGATAAAAGGGTCCCACCTGTCAAGCCCTTCAGTTTCTCAGAAATGAGATCACTATCAATGTTCTCTGCACCTCTCTTAATTGCAACCTTTGCTACCTCACATCTTTCCCATAGTTTGATCATAGATGCAGCCAACCCTTGAAGGTTACTACTTCGTCCAAGTGCGTAATGGTAGGGTAGGGGACGAGCTAGTCTCCTAAGGATTGTCATTTCTCTATCAGTTAACCTCGGTGGTACTCCTGAAGGAAGCAGACGAAAAGGCCTACGGTATCCAGGAACAATTGCTGGCAACAAATCAGCATCCACTGGAAGAGGGTCATACCCCCACCAATCAGAAAACCGTGGACCCAACCCATCCAATAATTTGTCAGCTTCCTCTGCGAGTTTGACCTCCCCAGGTAATTGTAACCGAAACTTATTTGGAGAACCAACACCAGCAACTAAGGTTGACCGAGCTCGACCACTGATCTCGCTAGGACGAGACACATTAGTGCTTGTATGTAATATTGCTTGCTGATCTTTTGTAGCACTGTTAATGCTTTGCTCTGCAGATCCAATGTCTAAATTTCCCTCAAGCGCATCAACACCAAACCGTCTAGTAAGATCATCGCCCTCCTCAGTATGATTGCTACCATGTTCTGCAGGATTATCAGAATCCTCTTCACTGCCACTTTGTTCGGAAGCTATTATAGCAAGATCCGCGTCCTCGTCATCAGAACTTGTATGCTCTGATGACTCATCCATGTCATTCTTCATTTCTCTATCATGGAAGTAAGGATACTTATAGTCAGTTCCTCTATATAATATGATGGTGCTTCCAGATCTCCAAATGACTAAGCCTCCAGTTTTTCTCTCGAGAATCTCGTGCGTGCGCTTCATGTTCATGGCGGAGACGTCGTCGCACCTGATCTTCACGAGCTCCGCGTTGCGCCACCGCTCGTGTATCCCGTTCACGATCCCCTCCGTCACCCCGGCCTTCCCGACCTTGAGCCTGTTCCGCAGCCGAATCCCGGCCCCCTGAAGCCGCCGCAGCTCGTCCCTCGGCAGCGCCAGCTCCGCGGCGGACGGCGGCGCCGACGCCGCGGCGCTACTATCCCTCCCGCCGCGCCTCCTGCGGCGAGACGCGGCGGCCCCCTCCCCATCGCCCGTGGCCCAGCTCGGGTCTAGGGTGGAGCCGACGCGGTGGCGCGGGAGCTGGGCCGGCGTGGGAACGAATATCTCGCCGGGGGACGCGCCGGCGCCCGCCTCCGGCGCCGCCGGACCGGGGGCCGCCTCCGGGTGGTCGGCCTCGAGGTAGCCGAGGCTGCGGAGCTTGTCGGAGATGCGGCGGAGAGCCGACTTGGCGAGGAGCTCCGGCGAGGGGGAGGCGTGGATGGGAGGGAGGAGGAG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0265500.1 | 4 | 23213378 | A | C |
| Osa04LNT0265500.1 | 4 | 23213721 | A | C |
| Osa04LNT0265500.1 | 4 | 23214110 | A | G |
| Osa04LNT0265500.1 | 4 | 23215002 | T | C |
| Osa04LNT0265500.1 | 4 | 23215522 | T | C |
| Osa04LNT0265500.1 | 4 | 23215691 | T | C |
| Osa04LNT0265500.1 | 4 | 23216031 | G | A |
| Osa04LNT0265500.1 | 4 | 23216197 | G | A |
| Osa04LNT0265500.1 | 4 | 23216848 | T | A |
| Osa04LNT0265500.1 | 4 | 23217196 | G | A |
| Osa04LNT0265500.1 | 4 | 23212521 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0265500.1 | osa-miR5830 | Cleavage | 5.0 | 20.509 | 1 | 24 |
| Osa04LNT0265500.1 | osa-miR166b-5p | Cleavage | 5.0 | 17.427 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR166c-5p | Cleavage | 4.5 | 17.427 | 1 | 20 |
| Osa04LNT0265500.1 | osa-miR166d-5p | Cleavage | 5.0 | 17.427 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395b | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395d | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395e | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395g | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395h | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395i | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395j | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395k | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395l | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395s | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395a | Cleavage | 4.5 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395u | Cleavage | 3.5 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR164c | Cleavage | 4.5 | 17.901 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR167h-3p | Cleavage | 4.5 | 16.506 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR172a | Cleavage | 5.0 | 13.946 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR172d-3p | Cleavage | 5.0 | 13.946 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR444a-5p | Translation | 3.0 | 15.897 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395m | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395n | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395p | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395q | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR395r | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR1435 | Cleavage | 5.0 | 13.031 | 1 | 20 |
| Osa04LNT0265500.1 | osa-miR1874-3p | Cleavage | 4.0 | 17.686 | 1 | 24 |
| Osa04LNT0265500.1 | osa-miR2090 | Translation | 5.0 | 11.663 | 1 | 22 |
| Osa04LNT0265500.1 | osa-miR395y | Cleavage | 5.0 | 9.708 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR1862f | Translation | 5.0 | 16.232 | 1 | 20 |
| Osa04LNT0265500.1 | osa-miR1862g | Translation | 5.0 | 16.232 | 1 | 20 |
| Osa04LNT0265500.1 | osa-miR3980a-3p | Cleavage | 5.0 | 18.08 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR3980b-3p | Cleavage | 5.0 | 18.08 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR5501 | Cleavage | 4.5 | 7.258 | 1 | 21 |
| Osa04LNT0265500.1 | osa-miR5501 | Translation | 5.0 | 18.629 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0265500.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0265500.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0265500.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0265500.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0265500.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0265500.1 | 4 | d11 | Morphological trait | Dwarf | nan | nan |
| Osa04LNT0265500.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0265500.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Osa04LNT0265500.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)