© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0267900.1
TCTGCAGCTGCAAATTTTCCATTCAATGTGACCATAGCTGGCTGGTTGCAGCAGATTGGGCACCAACTTTATAACTGCCAATAACAAACAATATAGCTTGACAAACAAATAATAACACATCCTGTATGTGAAAATTTCAATCTTGGACCAAAATATATGTTGTACTACAAATAATAAACATTAAACAGGTCTGATAAATCAGAGAGAAAGCTTTGTCCATCTAAAATTAAATGGAACTAATGTACATTGGACCACAGCCATAAATAGTTAAGGAAACAAATCTTGGTTCATCTAAAATTATATGGAAACAGCATTGTCCGATTGAGATGATGTTTGCACTCTTCTTCTAACATGGCACCGGCTGCAAGGTTCCAGAACAGTCAAATTAACTGTAGATGGAACTTTATCCTCAATGTATGTTCTGATAGCCGCGAGCCCCCTTGGAGCTTCCGTGAGAACACCATCTATCATGGGAAAACACCGCCTATACTTATCTTGATCACACCTAGGACCATAAATGGTATCCAATGTAAGACACTCAAGTGACACCGCATTATTGAGGATATAACATGTTAGTTCCACCAAGCTCTTCGCAGAGCTGAAACCAGTGATCTTCACACTCTTGAGGTGGCCATGGTGGTGTTCAGGTATGTGTCTCAGTTGTGAATCCGTGAAAATCGATTCATTCACCATACGTAGAGTCACATTTAATATCAAAGTCTCCAAGGAAGGAGATGCATTGATAAAAGAAACCAGAGAGAAATAGTCATATGGCCGGGAAATGGTCGATCCTGTTATCATACGAATGGTCAGGTGCTTAAGGTAGATGAATTTGGTAGGTAGCATTGGTGCATCAACCACCTCATTCACTGATTCAATGACAAGAGTTTCAAGATTTGGCATAATGGATGGCAGATTGGCACGAGCATCATGGATTGCACATCCCATGTCTAGTTTCTTCATTTGCAGCGTTTCCACAACTGAGAAGTTAACCCTGAATCCTCTATGGAAAAAACTAGAGAGATTTGGAGCTTTGCTCTCTATCACTTTCAAGCTTGAGCATTCAAAAACACTAAGTCTGCTGGGCTGCTGTAGGGCGAAAGGTATCTTCAGGCAAGTTATCTTCGTGCATTGAGTGAGCTCTAAATGCTCCAAAGCAAGAGAGTTGGAAAGAAGGCACTCTAACTCAGCCCATGTAGCTCACTAACCACAGAGACAGACTTGTTAGGCTTCTCAAGGGGGCAAGTTCAGGTGTGGGATGGAGGGCACAAAATCGAAGTTTAATGTACCGAAGTGAGTCTCGAACCCCATCAGACAAAAGTGAGCATGGGAAGTTGTATTGTTTGTTTGTGTCAAACAAAAAAAGGGTGAGTTCTTCGATCCCTGGTTTAAGAGCAATCTGAAGCCAACTGTCAAGATAACTAGTGCCATCGAACCCACACATGCCACTGTAGTCAAGCTTGAACGTTTTCAAGCTAATGCCTGAGTGGTTCCTGAGAATGCACCCAATTTTTCCGTGGAAATTCTCGCCAAACGCATTTCTCTTCAAGCCAATCGTGTCTTTATTAAAGATAAGATTGGGATGACACCTCCAAGAACGTAGAAAAGCACGAGATACGCAAGCAGCACGAGCAGCTTCACGCATTGACATAAAGGAATGTATACGAGACAATATGTCCTCAGGAAGATATGGGATTGAATTTCTCATCATTTTGCCAGCTTGAGAATGACCATCGCCATCATGTTCACACGGTGATATCTTTCTTTTACCCGTTGAGGCAATAAACCCAGAGCGGGCTCGGATTTGCGGCCGGCGATGCCGCCGCCGCCGCCGGCCGCGCCGCTGGGACATGAGCCGGTTCGGCGCCAACATCCCCAAAGACGAGCTCACGAAGATACCCCCTTCCTCCCTCGGATCTGACCGAGAAATCACTTCCGTTTCCCCCTCCTTCAGATCTCTCCTCTTCTCCTCTCCTGCCAATTTGCGGTTCGGTTTTGAACTCAAATTCGCACCGGCGACGGCGACGGCGACGGCGCCGGCGAACGGCGGGCGGAGCTATCTACTCGCCTACAGAACGACAAAAGTAACCAAACCCTATTCAGTGTGGGGACTGGGGAGTGGTTTGATCTTCTTTTTTTTTTTTTTTTGGCTTTTGGAGATGATCTCTTGCTCCGGTCTTATTGGATTGCGGAATAAGTCTATTCTGACTCCCTCTTGGGCTTGTTGAATCGCATCCCCAACTGTAAAACCAACCAGGTATAACGTCTCCCCCAACTTTAAAAAGGAATAAGTCAACTTTGGATCCCTCTATTTTGTCGCCCAGTCCGATTTTCATCCCTTGACCGCAAAACGGGTACAACCCGTCCCCCAACTTACAAAAACCGGACAAACGAGATCCCTCGGCGGTTTTGGCTGACGTGGCGCCTACGTGGCTTGTTTGACTAGGTCTCCGTCCCACGTGGCATTGACGTGGCGCTTACGTGGCAATTATATCTAGAAATAATAAAAAGCGTGGCCCCACATGTCAGCTGCACACAAAAAATATTTTTAAAATGGTGGGACCCACGTGGGCCCCACGTGTCAGCCTCACTCCTCTCTTCTTCCCACTCCCCCCTCTCTCTCTCCTTCCTGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0267900.1 | 4 | 23976991 | T | C |
| Osa04LNT0267900.1 | 4 | 23977251 | G | T |
| Osa04LNT0267900.1 | 4 | 23977385 | C | T |
| Osa04LNT0267900.1 | 4 | 23977524 | A | G |
| Osa04LNT0267900.1 | 4 | 23977627 | A | G |
| Osa04LNT0267900.1 | 4 | 23977805 | A | G |
| Osa04LNT0267900.1 | 4 | 23977871 | A | G |
| Osa04LNT0267900.1 | 4 | 23978815 | G | C |
| Osa04LNT0267900.1 | 4 | 23979366 | G | A |
| Osa04LNT0267900.1 | 4 | 23979496 | A | G |
| Osa04LNT0267900.1 | 4 | 23979711 | A | G |
| Osa04LNT0267900.1 | 4 | 23979842 | T | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0267900.1 | osa-miR5823 | Cleavage | 4.5 | 16.876 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR7695-3p | Cleavage | 5.0 | 24.027 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166a-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166b-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166c-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166d-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166e-3p | Translation | 4.5 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166f | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395b | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395d | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395e | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395g | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395h | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395i | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395j | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395k | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395l | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395s | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395t | Cleavage | 4.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395c | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395a | Cleavage | 3.0 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395f | Cleavage | 5.0 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395u | Cleavage | 4.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR159c | Cleavage | 4.5 | 14.936 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR159d | Cleavage | 4.5 | 14.936 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR159e | Cleavage | 4.5 | 14.936 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166k-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166l-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166g-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166h-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166m | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR166j-3p | Translation | 5.0 | 19.902 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395m | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395n | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395o | Cleavage | 4.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395p | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395q | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395v | Cleavage | 4.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR395r | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR444b.2 | Cleavage | 5.0 | 13.135 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR444c.2 | Cleavage | 5.0 | 13.135 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR810b.1 | Translation | 4.5 | 21.601 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR1869 | Translation | 5.0 | 12.157 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR1862d | Cleavage | 4.5 | 19.861 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR1862e | Cleavage | 4.5 | 19.194 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR2118a | Translation | 5.0 | 16.695 | 1 | 22 |
| Osa04LNT0267900.1 | osa-miR2880 | Translation | 5.0 | 13.406 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR395y | Cleavage | 3.5 | 17.227 | 1 | 21 |
| Osa04LNT0267900.1 | osa-miR5148a | Translation | 5.0 | 13.181 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR5148b | Translation | 5.0 | 13.181 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR5148c | Translation | 5.0 | 13.181 | 1 | 24 |
| Osa04LNT0267900.1 | osa-miR5515 | Cleavage | 5.0 | 17.681 | 1 | 21 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0267900.1 | 4 | qChla4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0267900.1 | 4 | qChlab4-1 | Morphological trait | Shoot/Seedling | C2807 | RM241 |
| Osa04LNT0267900.1 | 4 | qPH1-4-1 | Morphological trait | Dwarf | RM241 | C2807 |
| Osa04LNT0267900.1 | 4 | qCCFJ-4 | Physiological trait | Source activity | RM261 | RM3785 |
| Osa04LNT0267900.1 | 4 | d11 | Morphological trait | Dwarf | nan | nan |
| Osa04LNT0267900.1 | 4 | nan | Resistance or Tolerance | Other soil stress tolerance | RM5586 | RM3916 |
| Osa04LNT0267900.1 | 4 | orl1 | Morphological trait | Culm/leaf | S10628 | C377 |
| Osa04LNT0267900.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0267900.1 | 4 | nan | Morphological trait | Culm/leaf | RM3337 | RM3785 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)