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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0269700.1

GCCTCATCAGTTCTACAACTTACAACTGAATGGGATCTACATTCTACAGGCTGCAGGCATCTAAGTGCTTCATAGATAGTCTGAAATTTTACCTAGATACTGCGCTAGCCTATGCATGAGTCACTCAGATACAACATGTTATTATTACTGACAACCGCCATGAGCCTATGCCAACTCACGGCTCACTCCTCAGAGCGTGGCTTTCAGATGCGCCGGCGTTCTGTGCATGGGATGCCGCCACAATTCCTTTCATCTTCAGATCCCCTGGCAAGGGCAACCCCTCCTGCAGAAGCTGCTGTTGGACCGTGCTAAGATGATGATGCTGCTGCAGATGCATCTGTTGCTGCTGGTGCTGGGAGTGGATCTGTAGCTGCTGCAGCTGCTGGGCTGCCAGAAGAGATTGTATGTGACTGCGCTGGTAACCTTGTGGATTGGCGCCTCCAAATGAGGAGAGGCCAAAGTTTCCCACTTTGCCGCAGTTGGCATTAACCTGACCTGTTGCAACCTTTAGCTGCTGAATCTCATCTCTTAGCCTGTCATTTAGTGCATCCTGCAGCCTGACTTGTTGCTCCATTGTTTGCACCCGTATTTTCAAATCACTATTTTCACTTGTTAAACCAGTGGTATCTCTCTGTAACATGGACAACTGTGCTGATAGTGTAGTTGCTTCTGTCTGGAGAGTCTGTACTTTTCTCTCAAGCTCTGCAATGTAGCGCATCTTTCTTTCTTTTGACCTAGCAGCTGACTGGCGGTTTGCCAAGATCCTCTTGGCGCGCTTGGGGTCAACGAGGGCGAGCTCCGCGAGCTTGGCGTCAGAGATGGCCTTCTTAGCGTCCGCGCCCATCCTCCCCGCCACACCCGCGGCGGACGACGCCAGGGACGTGGACCCGTCCATCGACATGCTGTGCTGGTGACGCGGCCGAGCGGGCGGCGGCGGCAGCGGCGCCGCGGGCTCCGGGGTCTCGAGCTTGCCCCCGGCCTCGAGGAACATCTCGAACATCCGGCTGCCGCCCGCCCCCTCCATCTCCTCCTCCTCGTCATCCTCCTCCTCCTCCTCGTAGTCGTCCCCGCCGCCGCCGCCGACCTCCCCGACCACGCCGAGGTCGGCGTCGAAGGCGATGTCGTCCGGGAGCGCCGCCCCGAGGAGGATCTCCGACTGCGCGCGCCGGTGCCTCGCCGCCCGCCGCGGCGGCGAGTCCGGCATCGCGGCGACGTCGCGCGACGACAGCGACGACG

Coding Potentia
Explanation CPC Score
noncoding (weak) -0.936842
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0269700.1 4 24769844 C T
Osa04LNT0269700.1 4 24771057 A G
Osa04LNT0269700.1 4 24772104 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0269700.1 osa-miR6248 Cleavage 4.5 23.048 1 21
Osa04LNT0269700.1 osa-miR444a-5p Translation 4.5 13.66 1 21
Osa04LNT0269700.1 osa-miR530-5p Translation 4.5 19.412 1 20
Osa04LNT0269700.1 osa-miR1860-3p Cleavage 4.0 22.995 1 22
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0269700.1 4 qPH1-4-1 Morphological trait Dwarf RM241 C2807
Osa04LNT0269700.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0269700.1 4 qChla4-1 Morphological trait Shoot/Seedling C2807 RM241
Osa04LNT0269700.1 4 nan Morphological trait Culm/leaf RM3785 RM1388
Osa04LNT0269700.1 4 nan Morphological trait Culm/leaf RM3785 RM1388
Osa04LNT0269700.1 4 nan Morphological trait Culm/leaf RM3785 RM1388
Osa04LNT0269700.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0269700.1 4 qChlab4-1 Morphological trait Shoot/Seedling C2807 RM241
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus