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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0272800.1

GAAGGTGGTCCAGTACTTGACGCGGTCGCCGAACGCGCCGAAGCAGACGTCGGCGAAGTGCCCGAAATCCGACTGTATCTCGGCGTTGAGCCAAGCTCCGTATCTGTCTTCGAGCTCCTGTGGGATGTCGTAGTGTGTCAGGGTGACAAATGGCTGTATTCCTTTCAGTAAAATTGAATCGATAAGTTTGTTGTAGAAATCAATGCCCGCTGGGTTGACTCCACCAAATCTCCCTTTTGGAAGGATTCTGGACCATGATATCGAGAATCTATAGGCATTTACGCCGAGGGAGTTCATCAGCTCGACGTCCTCCTCGTAGCGGTGATAATGATCATCCGCGATATCTCCGTTGCTTCCATCCTTGATATTTCCTGGTAGATGAGTGAACACATCCCAATTGCTTAAACTTTTGTTGCCTTCTAGATATGCACCTTCAATCTGATACGAGGAGGTGGCCGTGCCGAAGAGGAACGACGCCGGGAAGTCGCTCCTGTGGATCGCAGACGCCAATGGGAGCAGCAGCAGGAGAGTGGAAACGAGCGAGGCATGGATCCGCGTCTTACTGCCTCCTGCCATATATCTTCTGAACTTGTCGCGAAGGCTGCAATGCTGATTATATCTAGCCTCTTCTAACCTTCTTCTAACCTTATATGAGGCAAAGAACCCAACAAAGGGGTATAGTACAACACGTGTGCGGCAGACGAGAAAAAGCTCGCACGATATATC

Coding Potentia
Explanation CPC Score
noncoding -1.34112
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0272800.1 4 25686222 A T
Osa04LNT0272800.1 4 25686642 G T
Osa04LNT0272800.1 4 25687338 G C
Osa04LNT0272800.1 4 25687466 T C
Osa04LNT0272800.1 4 25690670 C A
Osa04LNT0272800.1 4 25691796 A G
Osa04LNT0272800.1 4 25693502 T C
Osa04LNT0272800.1 4 25693509 T C
Osa04LNT0272800.1 4 25693844 T A
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0272800.1 osa-miR5793 Cleavage 4.5 19.311 1 21
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0272800.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0272800.1 4 qChla4-1 Morphological trait Shoot/Seedling C2807 RM241
Osa04LNT0272800.1 4 qChlab4-1 Morphological trait Shoot/Seedling C2807 RM241
Osa04LNT0272800.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
Osa04LNT0272800.1 4 qPH1-4-1 Morphological trait Dwarf RM241 C2807
Osa04LNT0272800.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0272800.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus