>Osa01LNT0025000.1

TCTCTCTCTCTTTCTCTCCCATGTCCGGCCATGGCCGCCACCACCCGATCTCCCTCACCGGAGCTTCGCAAGCCAAACCATCGCGCCATCGAGTTCGCCTCGACGAGGTGATTCCATTTTTCCTGTTTCCCCCTTCTCCCCCACCCCATAGCAACCACCACCGCCACCTCTCTTTGCCGCCGAAGATAAGCTCTTCTACTCGCCGTTCCGGCCATCTCCCTCACTCTCTCCGCCAGCCACCGCCCACC

Explanation	CPC Score
noncoding	-1.19443

Transcript ID	Chromosome	Locus	Ref	Alt

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa01LNT0025000.1	osa-miR1846a-5p	Cleavage	5.0	11.447	1	21
Osa01LNT0025000.1	osa-miR1846b-5p	Cleavage	5.0	11.447	1	21
Osa01LNT0025000.1	osa-miR1846c-5p	Cleavage	5.0	11.447	1	21
Osa01LNT0025000.1	osa-miR2919	Translation	3.5	12.062	1	19
Osa01LNT0025000.1	osa-miR5493	Cleavage	4.0	19.579	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa01LNT0025000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0025000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	R886
Osa01LNT0025000.1	1	nan	Resistance or Tolerance	Salinity tolerance	RM1	RM5
Osa01LNT0025000.1	1	qNVB-1-1	Morphological trait	Culm/leaf	R2159	C178
Osa01LNT0025000.1	1	nan	Physiological trait	Source activity	RG532	RM472
Osa01LNT0025000.1	1	qVB-1	Morphological trait	Culm/leaf	RZ776	RZ744
Osa01LNT0025000.1	1	qVB-1	Morphological trait	Culm/leaf	RZ776	RZ744
Osa01LNT0025000.1	1	brt1d	Resistance or Tolerance	Drought tolerance	C742	C904
Osa01LNT0025000.1	1	rfw1b	Resistance or Tolerance	Drought tolerance	C813	C955
Osa01LNT0025000.1	1	nan	Resistance or Tolerance	Drought tolerance	RM129	RM5
Osa01LNT0025000.1	1	nan	Morphological trait	Root	RM23	RM306

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus