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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0275900.1

TGTTTTTTCAAAAGGGCAGGTAATACTCGGTTCTCATAGCATTTTGCAGTACACTTCCTAGGAATACGCATTTTGTAAGGATATGGTGTTTTCCCATTCCTGTCAGGTACTTGCCGTATGATCTTTACATCGTTTGAGAGTGAGGATATGAATGACTCAACATCAAAAATATCCGCAAAATCACTGTGATACAGAACACAAAATCAGCAGAAGTTACTTCACTAAATTAACCAAGACAGGGTAAAGATTGTGACCTTGCATCTTTCCAGAAGGATTTCTGATCCAGGTTGGGAATGACAAGTGTTGCATTCAGAATACGGGCTGCAACAACAGCATCTATGATCCCTGTTCGCTGCTGGTTCAGGCCGCCGCTCGTTGCGATCATCAGATACCGATTCGGCTCCGTGACGGCCTTGGCATCTGC

Coding Potentia
Explanation CPC Score
noncoding -1.29261
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0275900.1 osa-miR169i-3p Translation 4.5 15.435 1 22
Osa04LNT0275900.1 osa-miR1866-5p Cleavage 4.0 12.058 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0275900.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0275900.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0275900.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
Osa04LNT0275900.1 4 nan Morphological trait Root RM3288 RM5503
Osa04LNT0275900.1 4 qCTS4-3 Resistance or Tolerance Cold tolerance RM241 RM317
Osa04LNT0275900.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus