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RiceLncPedia: a curated knowledgebase of rice Long non-coding RNAs
Summary
Sequence
Coding Potentia
Genome Browser
Expression
Variation
Sequence

>Osa04LNT0276300.1

AGTCTTATAACCTGAAACAGAGTACCAACAACAGCATTATGAAAGGGACAATCACACCACCCTGTTTTTCATTAGGTATTTGCTTAGCAGCTTATCAAACTTATGACCCCTTTTGGAAGGAGATTTTGCTTTCAAAATTTTATTTCTGGCAACAAATGATGCTACGTTGCATATCAGCTTAAATGTTGCATAGAAAGTGTCTCAAGCGCATCCATAGTGGCCTTTCCAGCCTTTTCAAAAGGATAATGAAACACAGCAGTACAGCACGGTAGATAAGCATGCGTTCTGCTTATTCTAACAGAGGATAATAAGAGGTAAAGCATGTCAAGAGCTCTGTGTGGACTAAAATGAGCAACAAGAGGAGCAAACCATTTGTTTACTCTATGCTGACATCTTCCGTGTCAAACACTAGAGAGTAGGGACAAGGCCATAGAGAAAGATGAATAATATAGACGCTTCGTACAGACAAGTGACGATCACAGGTTGGTGGAGGGCTGGAGACCTAGAATGACTGATGAAAAGTTGCACTTCCATCATAAACAATGGGATGGAGGGAGAACCGAAACTCTACGGAATTTCTCATGATGTGTCTATTCTTCAGTGGAAGAGTTAAAATGGGAGGGAGGAAAGTTTCATACTCAAAATCATTTGTTTCCCTCTGATGTGACATGGTACATGCTCACACTGTTCGAGTCAAATGCATTGAGCAGATTAGAAATGCTTAAAGGAAAGCGTTACAATTACTACACAAATTTCCAACTGTAAGAACAAAACCAAGCCGTAGTACAGTGATGTATCAGGGAAGTTGCAGCTATGTTTTTGTGTTCTGTGGTTCTGATTTTTTAGCTGGAGTTAAACTGTGACTGAAAACCTATGGCCAGTAATCATTTTGAACCGCATTAAGAAGCATATATGATTCTCTTACTTTCGGTTTGAATATTACTACTTTCTTGAGCAAAAGCACACAAATAATAAAGGCCAGATATATAGCTATAAATAAAGTAGAGAAAAATGTAACCTGGATATAGTAGGATCCAGGATCTACAATCCTACCACGTCTTCTGTCAAAAGGCAGAGCTCACTTGCAGTATCGGTCGGCCTTCTTGCGCACGCGGTCGTCGAGGGCCTCCTCCACGGTGCGGCTGCGGGAGGCCTTGGCGGCGTTGGCGGGGTCGTACCCGAACTTCTTCGACTCCACGGGGAATAGATCCTCGTACTTCATCCGCTTCGCCGCGTCGATGGTGTACTCGTCGCCGCCGCCCTCGGCGGCGCCCTCCGCGGAGGGCGCCGCTGCGCCTTCCGCGTCGGCTTCGGCGTCGGCGGGGGCGTCGGAGGCGGGCTTCTTGTTCTTCTTGTGCTTCTTCGGCGGCTTGTGGAGGGAGGCGGCCTCGCCGCCCTT

Coding Potentia
Explanation CPC Score
noncoding -1.19218
Genome Browser
Expression
Variation
Transcript ID Chromosome Locus Ref Alt
Osa04LNT0276300.1 4 28373882 G A
Osa04LNT0276300.1 4 28375649 G A
Osa04LNT0276300.1 4 28376342 A G
Transposon
Transcript ID Transposon ID Chromosome Strand Start End Counts
small RNA targets
Transcript ID MiRNA ID Inhibition Expectation Score Binding Start Binding End
Osa04LNT0276300.1 osa-miR812t Translation 3.5 22.502 1 24
Osa04LNT0276300.1 osa-miR812u Translation 3.5 22.502 1 24
Osa04LNT0276300.1 osa-miR2873c Translation 3.5 20.68 1 21
Osa04LNT0276300.1 osa-miR812n-3p Translation 3.5 22.502 1 24
Osa04LNT0276300.1 osa-miR5148a Cleavage 3.5 17.744 1 24
Osa04LNT0276300.1 osa-miR5148b Cleavage 3.5 17.744 1 24
Osa04LNT0276300.1 osa-miR5148c Cleavage 3.5 17.744 1 24
QTL
Transcript ID Chr QTL Gene Character Major Character Minor Marker Interval1 Marker Interval2
Osa04LNT0276300.1 4 qCTS4-3 Resistance or Tolerance Cold tolerance RM241 RM317
Osa04LNT0276300.1 4 nan Resistance or Tolerance Other soil stress tolerance RM5586 RM3916
Osa04LNT0276300.1 4 rfw4a Resistance or Tolerance Drought tolerance RM349 RM1136
Osa04LNT0276300.1 4 nan Morphological trait Root RM3288 RM5503
Osa04LNT0276300.1 4 gpp4 Morphological trait Seed RZ569 RZ565
Osa04LNT0276300.1 4 pss4.1 Physiological trait Source activity RZ740 RZ590
pre-miRNA
Transcript ID Pre-miRNA Identity(%) Alignment Length Pre-miRNA start Pre-miRNA end E-value Bitscore
GWAS
Transcript ID Chromosome Locus Trait Value Plus Minus