>Osa04LNT0278700.1

AGACCATAATAAGTAGTAGTTGTTTGATTGCATACAAGATTCTGAAATAGATAATACTTCCATGCAAAGTCTTTTATCACGGCATAAGTAGCCGATGTTAGATTGCCTCAGGGGCTTCTGAACTTCTCCTAGATGAGACATGACAATATCAGGAATATATGACAACGTTAGGAAGCATTTATCCAAGTACTTTCCTAGATGATACCTAGATGACACATGACAATATCAGGAATATATGACAACGTTAGGAAGCATTTATCCAAGTACTTTTCCTTCACTGAAGAACTCAAGCCATAGGCCTCCACTCTACAGATCTTGCCACCATTGGCGTCCCCAGGATAGCAATCGGTTCATCAATATCAGCCTCTTTGGTAGCGTCTCCAGGGCTAGCACTCTCTTCATCAAAGGCAGCATCACTTGTCTCTCCAGAGCAGGCACTCTTTTCATAGTCAAGATCAGCACTGGCGTCTCCAGTCTTGTCATCAAGAAGACCCACATCATATGCCTCACCATCAGCTTCAGGGCTAGCACTCCTCTCATTAGCATACGTCTCAAGCAAACTAACCCAAGATGTAAGATCTAGATAATTCTTCTTCCTAGTCTCCCTTGAGTTAAACCAACTAGGGAAGGGGTAAAGCAGCTTCTTATCAAGATTAGTGGAATCGAAGATCTTCTTGGAAATGCATACGAGCTCTTCAGCTTCTTCCCATAGAGCTTGTTCCTTGACAACATTCATCTTTGCAAGTCACAGACCTTGCTGGTTGTAGATCTGAGACCTGATGTCAGATATATTCTTGTAAAAATCATGAAGAATCAGGTTTGTCTCATCCAACAGAGCAGAACCAGTGATAGTTGGTAAAGGGTAATCCAGCTGCTCCAGGAACTGCCGCCTGATGGGCTCGGCTGTAGGGTTCACCGCCGGATGGCTCACGCGGAACAACCCTTGGATGGGGCGAGGGCGGCGTCGGCCACCGTTGGGGCGGGGACGGCGGCCCCAGATCGCGCGCGGGCGATACAGAAGATGATACGTCTGATCCAGTTCATCATCCCCTCTCCTCGCCATCGCCGACGCGGAGGAAGACGAGGCGGAGGCGGCGGCGGAGGCGGGGGCGTGGCGAGTCGAATGGGACGAGGGGTTCACTTAGGGTTTAGACTGTGGTTTATGTATGCGACGTAGAATCTCATCGAGCCGGGGAATGGATGTCTCTGGAAGATATTGTGGGGGGGGGGGGGGGGGGCGGATCGAGCTCAGCTGGGCCGGCCCGGCAAGGAAGAGATTTCGGTGGCTGCGGCGCAGGCAAAGATATCGAGAGATTTTTGCTGCAAATTCTTTTGTAATTCGCCGTTCTCGCTTCCAATCCAAAGCAGAAGATGGACAAGCATAAACGGACCTCCCTCGGTGAACTTCTTTTGAAACTAAAGCCAGCAACATGGTGCATATCTCTACTTAAGATGAAGGGATTCTCTTTACCTTGATTCATAGACCAATAGCAGCTTCAATCTTCATCCATGGCCAGCCATCTTAGAGTTCATCTTGCCCCTGATTCATTGTCCTCCATGGCCATCTTAGCCCTCACAAGCTTCTAATATAGAGCTAGGTGAAGGGAAGGAGGACAGATCTGAACTTTGGTGTTGGAGGGGCTTTGAAGCTGGGAAGAACAAGATCCATGGAGTTGATAGTTGATAACTAGCATCTATGGCTTTCTGGGGAGAGGAGGAAGAACAAGAAGACATGGTGTGTTGATTTGTGGATATGGGGACTTGGAAGGAAGGGTGGATTGGGGCTGGATCTAGGAAGCAGCTTCCATTGAGGATACCTAGGGAAGGAGGGGGAGAAAGCAGCTTTGTGGAGTAATGGAGGTCTGGTTGTTGAAGAAGACACAGATGTAAAGAAGATGTATGTGTGGTAGGCAATGGTTACAAGCAACAGGCAATAGTAGTGGAGTACT

Explanation	CPC Score
noncoding	-1.2679

Transcript ID	Chromosome	Locus	Ref	Alt
Osa04LNT0278700.1	4	30511290	C	T
Osa04LNT0278700.1	4	30513344	A	G

Transcript ID	Transposon ID	Chromosome	Strand	Start	End	Counts

Transcript ID	MiRNA ID	Inhibition	Expectation	Score	Binding Start	Binding End
Osa04LNT0278700.1	osa-miR5832	Translation	4.5	14.177	1	21
Osa04LNT0278700.1	osa-miR166g-5p	Translation	4.5	18.538	1	21
Osa04LNT0278700.1	osa-miR166i-3p	Translation	4.0	24.099	1	21
Osa04LNT0278700.1	osa-miR408-3p	Cleavage	4.5	20.387	1	21
Osa04LNT0278700.1	osa-miR535-3p	Translation	3.0	10.79	1	21
Osa04LNT0278700.1	osa-miR535-3p	Translation	3.0	11.171	1	21
Osa04LNT0278700.1	osa-miR1859	Cleavage	5.0	18.978	1	22
Osa04LNT0278700.1	osa-miR2101-5p	Cleavage	4.5	12.647	1	22
Osa04LNT0278700.1	osa-miR2101-3p	Cleavage	5.0	19.901	1	22
Osa04LNT0278700.1	osa-miR3979-5p	Cleavage	4.5	16.178	1	20
Osa04LNT0278700.1	osa-miR1854-5p	Cleavage	4.0	14.338	1	21

Transcript ID	Chr	QTL Gene	Character Major	Character Minor	Marker Interval1	Marker Interval2
Osa04LNT0278700.1	4	rfw4a	Resistance or Tolerance	Drought tolerance	RM349	RM1136
Osa04LNT0278700.1	4	gpp4	Morphological trait	Seed	RZ569	RZ565
Osa04LNT0278700.1	4	OsAOX1a	Resistance or Tolerance	Cold tolerance	R2737	R740
Osa04LNT0278700.1	4	pss4.1	Physiological trait	Source activity	RZ740	RZ590
Osa04LNT0278700.1	4	nan	Morphological trait	Root	RZ23	RM255
Osa04LNT0278700.1	4	nan	Morphological trait	Panicle/flower	RM303	RM348
Osa04LNT0278700.1	4	nan	Morphological trait	Panicle/flower	RM303	RM255
Osa04LNT0278700.1	4	qPN-4b	Resistance or Tolerance	Drought tolerance	RM317	RM255
Osa04LNT0278700.1	4	Xa2	Resistance or Tolerance	Bacterial blight resistance	RM317	RM349
Osa04LNT0278700.1	4	nan	Morphological trait	Root	RM3288	RM5503

Transcript ID	Pre-miRNA	Identity(%)	Alignment Length	Pre-miRNA start	Pre-miRNA end	E-value	Bitscore

Transcript ID	Chromosome	Locus	Trait	Value	Plus Minus