© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)
>Osa04LNT0278900.1
GGCTTTAACAGCAGTGATACATCTAGTTGAAAAAAACATATATAGTTGTTTACCCAATTTCACTAAGTCTTCAAACAGCTGGATGGTAGTAATAACCAAGCCATCATATTTCACAAGACAAGCATTCAGTGCTCATAACCGAGGAATAGGTGAAAAGAAAGGACAAAATACAAGAAAAGACTATACATCCAAACCCCAGCTTAACATCTATTTTTACTAACCTTAATCATCCCCAACATTTGTACATTTTTCTCAATTCTAACATTCCACGAAACAAACTCCAAGTCAAAACATTTAAAAAGCACTTCTTCAGCAGCAGCTCTTCTAAGTTCCAACACCCAGCTTGCTAAACCGCTATGACATCGATATTTGAGGTATCTTCACATCTCAGGACTAATCCATAAAGGTCCCTTGGGAGGACACACTTGGCCCACTGGCAACCAGTAGAGATGGGCTCTGGTGGAGGAACAATCATCAACACGTTGTCATTCTTTTGAACAACCCCCATCACACTCACGGTGCTGCCTTCCTTAATGTATCCTTCTTTTAGGCGCATTATCCGATCATCACTTGAGAGATTCCTTTCCCGCAGCCATCTTCGAAATTCAGGGGACATGTCTTTGTTGTCAGGATCAATGTCAATAATGACAGATTCATCCACGAATGGGGTCACTCGAGCACCATATCCTGCTTTCACCAATGCCCGGAGCCCAGATTGAAAATCTGAGATGTAGAAATCCACTGCGTGTTGCTCCATTGACCGTAATCCCCAGGTAAACCGGTGATGCTGGGTGTTGGCAGCTTTTGAGTCCCAACCCCTATATTCATGTAAGGTAGTTGAAGTGTACACACATCTTGGAACCCTTTGATACGAGGACTCGAGAGGGAAATTTCCACAAGTAACAACCCCTGTAACCTTGATATACTGTCCATCTTTAGCAGTTCTTAGATCAGCATCAGAATAGCGATCCACAAACCCAATCACACCTCTCCTTGCCCAGCAAGCATTCCAAATGAAAAGTGCAGCAACAAAACCAAACAGCACCAGAACAACTATCAGAAGAATTGCATTGTGAACAGCACTAAGAATCAAGATGCCTGCTATGAGCCCCAACACAAAGAGCACACCCACTGCCCCGAGTATTAGCTTCGAAAGGCTTCCTGTGATTGAGTAACTGTCTTCTGTGGTGATTTTAGTAACAGCCTGGTTATGAGAAAAGGATGTGGCCCGCGTCTTCTTGGATGCAGCAGAATCAAGAGGTCCAGATACTTTCCTTTGAGCACCAGACGAATTCAGTGGCCCCGATGTGATAGGCCCAGATGTGATAAGTCCAGTTGTAGGAAGCATAGGAGGGAGAGGGCCAGAATTCTGCCGCGCCATTGGGGTCACTCCTCCAGACTGAGGACCTGATGATCTCTTTACTGGTTCTCCATGCTTATTGAGAGGTCCGGAGCTAGATTTTGCTCTTGCTGATCCACTAGCACCAGGAACTGAAGATGATAGAGAACCAGAGTAGTTGGACCGATCCCCGGCATTAGGGACAGGTCCAGAGTTTGATGCAGCACCTCCAAATGACGCATTCCTCGAAGGTGCATTGCTCAGTGGACCAGATTTTCTTGACTTGACAGCGTGGAGCTCAAACATCTTCCCAAGCTCTCCAGATTTTTTTATATCACCACCAGTGTATGGCATGGCAGTGGAACAAATGGTTGGGGCCTTCTCCTTCGGTTGCTCAGGTCGGCCAGACACATACAGGCCATTGCTAAGCTGATGCGATGGAAACCTCGAACCCATGTTTTTGAAACAACAGAATAAGCTATATCTTAGTGTTCAACCACCACTATAGTACAACCAAGTGAGATTATATTTGGGTCTTGATGTGCACAGCTATCCTTCTCATAGAACAACCTATATCTTGCATCAGCACCTTCACCACCGAGTCGAGCCCGAGACACGGAGGAGGGATGGCGGTGGAATGAGGCCAGCAACAACCGCCGCCGCCGCCGCCCCCGCGCGAGGAGAGGGCTAGCCGCCGGCTGAGGAGAGGCACGCCCACGCGCCGTGCGGCTCGCCGTCGCCGGCCGCGTCGCGCGCGTGGAGGCGAGGCGAGGTGGGGGAGGGGAGGGGAGAGGAGAGGAGGCGAGGTGGTCGTGCGTGCGTGCGCTGGAGACAGAGAGGAAGAAGGGG
| Transcript ID | Chromosome | Locus | Ref | Alt |
|---|---|---|---|---|
| Osa04LNT0278900.1 | 4 | 30643076 | C | A |
| Osa04LNT0278900.1 | 4 | 30642430 | A | G |
| Osa04LNT0278900.1 | 4 | 30642693 | C | G |
| Osa04LNT0278900.1 | 4 | 30644409 | T | C |
| Osa04LNT0278900.1 | 4 | 30644820 | A | T |
| Osa04LNT0278900.1 | 4 | 30644821 | T | A |
| Osa04LNT0278900.1 | 4 | 30644845 | G | T |
| Osa04LNT0278900.1 | 4 | 30644890 | T | G |
| Osa04LNT0278900.1 | 4 | 30642448 | A | C |
| Transcript ID | MiRNA ID | Inhibition | Expectation | Score | Binding Start | Binding End |
|---|---|---|---|---|---|---|
| Osa04LNT0278900.1 | osa-miR5079b | Translation | 5.0 | 9.349 | 1 | 22 |
| Osa04LNT0278900.1 | osa-miR444a-3p.2 | Cleavage | 4.5 | 22.185 | 1 | 21 |
| Osa04LNT0278900.1 | osa-miR444d.2 | Cleavage | 4.5 | 22.185 | 1 | 21 |
| Osa04LNT0278900.1 | osa-miR444e | Cleavage | 4.5 | 22.185 | 1 | 21 |
| Osa04LNT0278900.1 | osa-miR444f | Cleavage | 5.0 | 22.185 | 1 | 21 |
| Osa04LNT0278900.1 | osa-miR812f | Cleavage | 5.0 | 5.856 | 1 | 24 |
| Osa04LNT0278900.1 | osa-miR2098-3p | Cleavage | 3.5 | 9.466 | 1 | 20 |
| Osa04LNT0278900.1 | osa-miR812l | Cleavage | 4.5 | 12.444 | 1 | 24 |
| Osa04LNT0278900.1 | osa-miR812m | Cleavage | 4.5 | 12.444 | 1 | 24 |
| Osa04LNT0278900.1 | osa-miR5079a | Translation | 5.0 | 9.349 | 1 | 22 |
| Osa04LNT0278900.1 | osa-miR5080 | Translation | 5.0 | 16.373 | 1 | 21 |
| Osa04LNT0278900.1 | osa-miR5503 | Cleavage | 4.0 | 24.954 | 1 | 22 |
| Osa04LNT0278900.1 | osa-miR5517 | Cleavage | 5.0 | 13.618 | 1 | 21 |
| Osa04LNT0278900.1 | osa-miR812k | Cleavage | 4.5 | 12.444 | 1 | 24 |
| Transcript ID | Chr | QTL Gene | Character Major | Character Minor | Marker Interval1 | Marker Interval2 |
|---|---|---|---|---|---|---|
| Osa04LNT0278900.1 | 4 | OsAOX1a | Resistance or Tolerance | Cold tolerance | R2737 | R740 |
| Osa04LNT0278900.1 | 4 | pss4.1 | Physiological trait | Source activity | RZ740 | RZ590 |
| Osa04LNT0278900.1 | 4 | nan | Morphological trait | Root | RZ23 | RM255 |
| Osa04LNT0278900.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM348 |
| Osa04LNT0278900.1 | 4 | nan | Morphological trait | Panicle/flower | RM303 | RM255 |
| Osa04LNT0278900.1 | 4 | qPN-4b | Resistance or Tolerance | Drought tolerance | RM317 | RM255 |
| Osa04LNT0278900.1 | 4 | Xa2 | Resistance or Tolerance | Bacterial blight resistance | RM317 | RM349 |
| Osa04LNT0278900.1 | 4 | nan | Morphological trait | Root | RM3288 | RM5503 |
| Osa04LNT0278900.1 | 4 | gpp4 | Morphological trait | Seed | RZ569 | RZ565 |
| Osa04LNT0278900.1 | 4 | rfw4a | Resistance or Tolerance | Drought tolerance | RM349 | RM1136 |
| Transcript ID | Pre-miRNA | Identity(%) | Alignment Length | Pre-miRNA start | Pre-miRNA end | E-value | Bitscore |
|---|
© Copyright 2019 Huazhong Agricultural University , Central China Normal University (School of Life Science, Central China Normal University)